Re: [AMBER] Citation for frcmod.parmbsc0, frcmod.ionsjc_tip3p

From: Ramin Salimi <>
Date: Wed, 31 May 2017 12:41:36 +0000

Dr. Case, and Saeid
Thanks so much for the reply.

Sent from my Windows Phone
From: David A Case<>
Sent: 5/31/2017 7:26 AM
To: AMBER Mailing List<>
Subject: Re: [AMBER] Citation for frcmod.parmbsc0, frcmod.ionsjc_tip3p

On Wed, May 31, 2017, Ramin Salimi wrote:

> Do we need to make citation for using frcmod.parmbsc0, and
> frcmod.ionsjc_tip3p?

It's polite to do so; references are given in Chap 3 of the Amber Reference
Manual. In practice, this step is often skipped.

> It is my first time citing amber, and all the used elements in it, Could
> you please inform me if I need to cite any things other than Amber
> itself, and the forcefield(s) used?

Unless you are using some special feature (say, self-guided Langevin dynamics,
or similar), it should not generally be necessary to provide a citation for
all the components that go into a modern MD simulation. Citing the program
and the force fields should be sufficient.


AMBER mailing list
AMBER mailing list
Received on Wed May 31 2017 - 06:00:04 PDT
Custom Search