Amber Archive Mar 2012 by thread
598 messages
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Starting
Thu Mar 01 2012 - 01:00:02 PST,
Ending
Sat Mar 31 2012 - 23:30:03 PDT
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[AMBER] problem with MMPBSA script
kureeckal ramesh
(Thu Mar 01 2012 - 00:52:39 PST)
Re: [AMBER] problem with MMPBSA script
Nadine.Homeyer.uni-duesseldorf.de
(Thu Mar 01 2012 - 01:51:57 PST)
[AMBER] error in sander_com.1.out
kureeckal ramesh
(Thu Mar 01 2012 - 02:30:54 PST)
Re: [AMBER] error in sander_com.1.out
Nadine.Homeyer.uni-duesseldorf.de
(Thu Mar 01 2012 - 03:12:05 PST)
Re: [AMBER] problem with MMPBSA script
David A Case
(Thu Mar 01 2012 - 05:14:41 PST)
[AMBER] MMPBSA and explicit ions: what should I do?
tommaso.casalini.mail.polimi.it
(Thu Mar 01 2012 - 02:21:51 PST)
Re: [AMBER] MMPBSA and explicit ions: what should I do?
David A Case
(Thu Mar 01 2012 - 05:11:42 PST)
[AMBER] MMPBSA issue: incosistency within internal potential error
tommaso.casalini.mail.polimi.it
(Thu Mar 01 2012 - 07:30:36 PST)
Re: [AMBER] mm_pbsa error: Flag "RADII" not found in PARM file
g t
(Thu Mar 01 2012 - 06:40:24 PST)
Re: [AMBER] mm_pbsa error: Flag "RADII" not found in PARM file
g t
(Thu Mar 01 2012 - 06:59:07 PST)
Re: [AMBER] mm_pbsa error: Flag "RADII" not found in PARM file
Jason Swails
(Thu Mar 01 2012 - 07:24:57 PST)
Re: [AMBER] mm_pbsa error: Flag "RADII" not found in PARM file
g t
(Thu Mar 01 2012 - 08:32:45 PST)
Re: [AMBER] Help with solvating organic molecule with input .prmtop file
Andy Ballard
(Thu Mar 01 2012 - 09:28:23 PST)
Re: [AMBER] Help with solvating organic molecule with input .prmtop file
Jason Swails
(Thu Mar 01 2012 - 12:33:32 PST)
[AMBER] slow : amber job
akshar bhosale
(Thu Mar 01 2012 - 09:44:09 PST)
Re: [AMBER] slow : amber job
Aron Broom
(Thu Mar 01 2012 - 10:02:55 PST)
Re: [AMBER] slow : amber job
Cannon, John F.
(Thu Mar 01 2012 - 10:27:29 PST)
Re: [AMBER] slow : amber job
akshar bhosale
(Fri Mar 02 2012 - 19:14:20 PST)
Re: [AMBER] slow : amber job
Jason Swails
(Sat Mar 03 2012 - 04:34:23 PST)
Re: [AMBER] slow : amber job
akshar bhosale
(Sat Mar 03 2012 - 10:26:45 PST)
Re: [AMBER] slow : amber job
Carlos Simmerling
(Sat Mar 03 2012 - 10:35:22 PST)
Re: [AMBER] slow : amber job
akshar bhosale
(Sat Mar 03 2012 - 19:21:33 PST)
Re: [AMBER] slow : amber job
Aron Broom
(Sat Mar 03 2012 - 20:03:51 PST)
[AMBER] ABMD in pmemd.cuda in AMBER 12
Aron Broom
(Thu Mar 01 2012 - 10:08:52 PST)
Re: [AMBER] ABMD in pmemd.cuda in AMBER 12
Jason Swails
(Thu Mar 01 2012 - 10:18:17 PST)
Re: [AMBER] ABMD in pmemd.cuda in AMBER 12
M. L. Dodson
(Thu Mar 01 2012 - 10:43:37 PST)
Re: [AMBER] ABMD in pmemd.cuda in AMBER 12
Jason Swails
(Thu Mar 01 2012 - 12:35:47 PST)
Re: [AMBER] ABMD in pmemd.cuda in AMBER 12
Aron Broom
(Thu Mar 01 2012 - 10:45:37 PST)
Re: [AMBER] ABMD in pmemd.cuda in AMBER 12
Ross Walker
(Thu Mar 01 2012 - 13:33:38 PST)
[AMBER] Question about Simulated Annealing procedure
filip fratev
(Sun Mar 04 2012 - 18:29:13 PST)
Re: [AMBER] Question about Simulated Annealing procedure
Carlos Simmerling
(Mon Mar 05 2012 - 05:19:43 PST)
Re: [AMBER] Question about Simulated Annealing procedure
filip fratev
(Mon Mar 05 2012 - 06:08:35 PST)
Re: [AMBER] ABMD in pmemd.cuda in AMBER 12
Aron Broom
(Mon Mar 26 2012 - 10:39:36 PDT)
[AMBER] Problem in creating topology of NAD
Ashutosh Shandilya
(Thu Mar 01 2012 - 22:50:06 PST)
Re: [AMBER] Problem in creating topology of NAD
Ashutosh Shandilya
(Thu Mar 01 2012 - 22:55:25 PST)
Re: [AMBER] Problem in creating topology of NAD
FyD
(Thu Mar 01 2012 - 23:18:29 PST)
Re: [AMBER] Problem in creating topology of NAD
FyD
(Thu Mar 01 2012 - 23:05:26 PST)
[AMBER] top and crd file error
kanika sharma
(Thu Mar 01 2012 - 22:59:03 PST)
Re: [AMBER] top and crd file error
Aron Broom
(Thu Mar 01 2012 - 23:13:01 PST)
Re: [AMBER] top and crd file error
kanika sharma
(Thu Mar 01 2012 - 23:22:07 PST)
Re: [AMBER] top and crd file error
Aron Broom
(Thu Mar 01 2012 - 23:34:47 PST)
[AMBER] Distance plot
Beale, John
(Fri Mar 02 2012 - 05:57:35 PST)
Re: [AMBER] Distance plot
Cannon, John F.
(Fri Mar 02 2012 - 06:42:27 PST)
Re: [AMBER] Distance plot
Beale, John
(Fri Mar 02 2012 - 06:50:18 PST)
[AMBER] AMBER force calculations
David Condon
(Fri Mar 02 2012 - 06:25:10 PST)
Re: [AMBER] AMBER force calculations
Brian Radak
(Fri Mar 02 2012 - 06:47:43 PST)
Re: [AMBER] AMBER force calculations
David Condon
(Fri Mar 16 2012 - 13:03:29 PDT)
Re: [AMBER] AMBER force calculations
Brian Radak
(Fri Mar 16 2012 - 13:10:53 PDT)
Re: [AMBER] AMBER force calculations
David Condon
(Fri Mar 16 2012 - 13:30:45 PDT)
Re: [AMBER] AMBER force calculations
Jason Swails
(Fri Mar 16 2012 - 15:01:19 PDT)
[AMBER] Defining sulfonyl halide atom type
Chris Bryant
(Fri Mar 02 2012 - 09:03:08 PST)
Re: [AMBER] Defining sulfonyl halide atom type
FyD
(Sat Mar 03 2012 - 10:39:04 PST)
[AMBER] control_rmsd_in TMD
neha sree
(Fri Mar 02 2012 - 11:57:42 PST)
Re: [AMBER] md sticking!
amir abbasi
(Sat Mar 03 2012 - 04:37:25 PST)
[AMBER] MMPB(GB)SA: two questions
George Tzotzos
(Sat Mar 03 2012 - 05:05:05 PST)
Re: [AMBER] MMPB(GB)SA: two questions
Cannon, John F.
(Mon Mar 05 2012 - 05:37:16 PST)
Re: [AMBER] MMPB(GB)SA: two questions
George Tzotzos
(Mon Mar 05 2012 - 09:23:06 PST)
[AMBER] PDB trajectory format
Dmitry Osolodkin
(Sat Mar 03 2012 - 08:10:46 PST)
Re: [AMBER] PDB trajectory format
Aron Broom
(Sat Mar 03 2012 - 08:45:16 PST)
Re: [AMBER] PDB trajectory format
Daniel Roe
(Sat Mar 03 2012 - 10:53:39 PST)
Re: [AMBER] PDB trajectory format
Dmitry Osolodkin
(Thu Mar 15 2012 - 09:15:21 PDT)
Re: [AMBER] PDB trajectory format
Daniel Roe
(Thu Mar 15 2012 - 09:46:40 PDT)
Re: [AMBER] PDB trajectory format
Dmitry Osolodkin
(Fri Mar 16 2012 - 08:08:48 PDT)
Re: [AMBER] PDB trajectory format
Daniel Roe
(Fri Mar 16 2012 - 08:43:20 PDT)
Re: [AMBER] PDB trajectory format
Dmitry Osolodkin
(Fri Mar 16 2012 - 09:11:26 PDT)
Re: [AMBER] PDB trajectory format
Daniel Roe
(Fri Mar 16 2012 - 09:30:34 PDT)
Re: [AMBER] implicit and explicit
Carlos Simmerling
(Sun Mar 04 2012 - 04:35:12 PST)
[AMBER] using GAFF with TIP3P model for simulation of solvated organic molecule
Andy Ballard
(Sun Mar 04 2012 - 12:19:22 PST)
Re: [AMBER] using GAFF with TIP3P model for simulation of solvated organic molecule
Jason Swails
(Sun Mar 04 2012 - 17:46:13 PST)
[AMBER] different residues use different force to restrict
xiaojiong
(Sun Mar 04 2012 - 17:41:16 PST)
Re: [AMBER] different residues use different force to restrict
David A Case
(Mon Mar 05 2012 - 05:15:04 PST)
[AMBER] MM-PBSA: different dielectric constants for ligand and receptor?
Antonija Tomić
(Mon Mar 05 2012 - 02:07:38 PST)
Re: [AMBER] MM-PBSA: different dielectric constants for ligand and receptor?
David A Case
(Mon Mar 05 2012 - 05:20:10 PST)
[AMBER] Free Energy Calculate
mehdi bagherpoor
(Mon Mar 05 2012 - 04:41:05 PST)
Re: [AMBER] Free Energy Calculate
David A Case
(Mon Mar 05 2012 - 05:24:28 PST)
[AMBER] Error in amber output files
souvik sur
(Mon Mar 05 2012 - 05:19:40 PST)
Re: [AMBER] Error in amber output files
Jason Swails
(Mon Mar 05 2012 - 13:34:51 PST)
Re: [AMBER] Error in amber output files
souvik sur
(Mon Mar 05 2012 - 21:11:01 PST)
Re: [AMBER] Error in amber output files
David A Case
(Tue Mar 06 2012 - 04:50:08 PST)
Re: [AMBER] Error in amber output files
Jason Swails
(Tue Mar 06 2012 - 07:44:32 PST)
[AMBER] ./nab -c dna3.nab,nab2c failed!
Yudong Sun
(Mon Mar 05 2012 - 06:40:03 PST)
Re: [AMBER] ./nab -c dna3.nab,nab2c failed!
David A Case
(Mon Mar 05 2012 - 06:54:20 PST)
[AMBER] Alkali and Halide Monovalent Ion : paper
CHAMI F.
(Mon Mar 05 2012 - 09:18:17 PST)
Re: [AMBER] Alkali and Halide Monovalent Ion : paper
Brian Radak
(Mon Mar 05 2012 - 09:28:40 PST)
Re: [AMBER] Alkali and Halide Monovalent Ion : paper
CHAMI F.
(Tue Mar 06 2012 - 07:27:17 PST)
Re: [AMBER-Developers] [AMBER] Alkali and Halide Monovalent Ion : paper
David A Case
(Tue Mar 06 2012 - 09:42:15 PST)
[AMBER] turning off solute-solvent interactions
Andy Ballard
(Mon Mar 05 2012 - 13:22:17 PST)
Re: [AMBER] turning off solute-solvent interactions
Brian Radak
(Mon Mar 05 2012 - 14:01:27 PST)
[AMBER] Modified phosphotyrosine parameters
Ilya Belalov
(Mon Mar 05 2012 - 17:32:44 PST)
Re: [AMBER] Modified phosphotyrosine parameters
FyD
(Tue Mar 06 2012 - 02:18:37 PST)
[AMBER] Parameters
Maxier Acosta
(Mon Mar 05 2012 - 20:27:45 PST)
Re: [AMBER] Parameters
FyD
(Tue Mar 06 2012 - 01:48:22 PST)
Re: [AMBER] Parameters
setyanto md
(Wed Mar 07 2012 - 21:18:55 PST)
Re: [AMBER] ATP minimization
Sangita Kachhap
(Mon Mar 05 2012 - 21:58:33 PST)
Re: [AMBER] ATP minimization
FyD
(Tue Mar 06 2012 - 01:17:28 PST)
[AMBER] performance dependency on OS
amir abbasi
(Tue Mar 06 2012 - 02:41:18 PST)
Re: [AMBER] performance dependency on OS
steinbrt.rci.rutgers.edu
(Tue Mar 06 2012 - 02:56:09 PST)
[AMBER] SASA Plot
Beale, John
(Tue Mar 06 2012 - 03:08:06 PST)
Re: [AMBER] SASA Plot
Rajeswari A.
(Tue Mar 06 2012 - 03:31:04 PST)
Re: [AMBER] SASA Plot
Daniel Roe
(Tue Mar 06 2012 - 04:05:16 PST)
Re: [AMBER] SASA Plot
Bruno Luís Pinto de Oliveira
(Tue Mar 06 2012 - 07:00:49 PST)
Re: [AMBER] SASA Plot
setyanto md
(Wed Mar 07 2012 - 00:51:29 PST)
Re: [AMBER] SASA Plot
Daniel Roe
(Wed Mar 07 2012 - 09:27:56 PST)
Re: [AMBER] SASA Plot
setyanto md
(Wed Mar 07 2012 - 21:05:23 PST)
[AMBER] correct inconsistencies in [DR]NA_CI.lib
Thomas Gaillard
(Tue Mar 06 2012 - 08:57:36 PST)
Re: [AMBER] correct inconsistencies in [DR]NA_CI.lib
Jason Swails
(Tue Mar 06 2012 - 20:38:09 PST)
[AMBER] Assignment of partial charge to a molecule
gargi borgohai
(Tue Mar 06 2012 - 10:05:07 PST)
Re: [AMBER] Assignment of partial charge to a molecule
Aron Broom
(Tue Mar 06 2012 - 10:18:47 PST)
[AMBER] RED resp step failed
Albert
(Tue Mar 06 2012 - 11:38:11 PST)
Re: [AMBER] RED resp step failed
Ismail, Mohd F.
(Tue Mar 06 2012 - 13:41:45 PST)
Re: [AMBER] RED resp step failed
Albert
(Wed Mar 07 2012 - 22:24:46 PST)
Re: [AMBER] [q4md-fft] Re: RED resp step failed
FyD
(Wed Mar 07 2012 - 23:30:59 PST)
[AMBER] Residual Dipolar Coupling
Rahul Banerjee
(Tue Mar 06 2012 - 13:32:27 PST)
Re: [AMBER] Residual Dipolar Coupling
case
(Wed Mar 07 2012 - 05:04:23 PST)
[AMBER] Dedication from Ibrahim - Manchester/Minia
Mahmoud Ibrahim
(Tue Mar 06 2012 - 14:17:57 PST)
Re: [AMBER] Dedication from Ibrahim - Manchester/Minia
David A Case
(Wed Mar 07 2012 - 12:01:38 PST)
[AMBER] cluster configuration help
Sangeetha B
(Tue Mar 06 2012 - 19:27:09 PST)
[AMBER] cluster configuration help
Sangeetha B
(Fri Mar 09 2012 - 09:16:42 PST)
Re: [AMBER] cluster configuration help
Thomas Cheatham
(Sat Mar 10 2012 - 10:24:33 PST)
Re: [AMBER] cluster configuration help
Sangeetha B
(Sun Mar 11 2012 - 08:11:30 PDT)
[AMBER] MMGBSA residue-wise decomposition
Rajeswari A.
(Tue Mar 06 2012 - 21:18:28 PST)
[AMBER] MMGBSA residue-wise decomposition
Rajeswari A.
(Wed Mar 07 2012 - 21:10:52 PST)
[AMBER] MMGBSA residue-wise decomposition
Rajeswari A.
(Tue Mar 13 2012 - 04:42:53 PDT)
Re: [AMBER] MMGBSA residue-wise decomposition
Carlos Simmerling
(Wed Mar 14 2012 - 06:05:01 PDT)
Re: [AMBER] MMGBSA residue-wise decomposition
Jason Swails
(Wed Mar 14 2012 - 06:34:40 PDT)
Re: [AMBER] MMGBSA residue-wise decomposition
Rajeswari A.
(Wed Mar 14 2012 - 23:58:35 PDT)
Re: [AMBER] MMGBSA residue-wise decomposition
Jason Swails
(Thu Mar 15 2012 - 07:10:50 PDT)
[AMBER] how to keep atom restrained in R.E.D?
Albert
(Tue Mar 06 2012 - 22:45:37 PST)
Re: [AMBER] [q4md-fft] how to keep atom restrained in R.E.D?
FyD
(Wed Mar 07 2012 - 01:01:44 PST)
[AMBER] Fwd: SASA Plot
João Ribeiro
(Wed Mar 07 2012 - 02:16:53 PST)
[AMBER] covert CHARMM format PDB file to AMBER formart
Tong Zhu
(Wed Mar 07 2012 - 02:25:05 PST)
Re: [AMBER] covert CHARMM format PDB file to AMBER formart
c00jsw00.nchc.narl.org.tw
(Wed Mar 07 2012 - 03:11:32 PST)
Re: [AMBER] covert CHARMM format PDB file to AMBER formart
case
(Wed Mar 07 2012 - 05:09:19 PST)
[AMBER] AM1
Jacopo Sgrignani
(Wed Mar 07 2012 - 03:17:51 PST)
Re: [AMBER] AM1
Brian Radak
(Wed Mar 07 2012 - 07:33:33 PST)
Re: [AMBER] AM1
Jacopo Sgrignani
(Wed Mar 07 2012 - 23:23:57 PST)
[AMBER] GPU performance and GPU Direct
steinbrt.rci.rutgers.edu
(Wed Mar 07 2012 - 05:26:53 PST)
Re: [AMBER] GPU performance and GPU Direct
Gould, Ian R
(Wed Mar 07 2012 - 06:14:08 PST)
Re: [AMBER] Best way to implement PBC
Ben Ahmady
(Wed Mar 07 2012 - 07:26:35 PST)
Re: [AMBER] Best way to implement PBC
steinbrt.rci.rutgers.edu
(Wed Mar 07 2012 - 13:22:35 PST)
[AMBER] cpptraj surf Segmentation fault
Guillermo Mulliert Carlín
(Wed Mar 07 2012 - 07:51:07 PST)
Re: [AMBER] cpptraj surf Segmentation fault
Daniel Roe
(Wed Mar 07 2012 - 08:12:46 PST)
[AMBER] non-linear PB solver within MMPBSA: questions regarding EEL, eneopt and cutnb
Jan-Philip Gehrcke
(Wed Mar 07 2012 - 08:23:32 PST)
Re: [AMBER] non-linear PB solver within MMPBSA: questions regarding EEL, eneopt and cutnb
Jason Swails
(Sat Mar 10 2012 - 13:36:04 PST)
[AMBER] Dihedral analysis
Ibrahim Moustafa
(Wed Mar 07 2012 - 10:05:00 PST)
Re: [AMBER] Dihedral analysis
Niel Henriksen
(Thu Mar 08 2012 - 06:10:26 PST)
Re: [AMBER] Dihedral analysis
Ibrahim Moustafa
(Thu Mar 08 2012 - 08:06:33 PST)
Re: [AMBER] Dihedral analysis
CHAMI F.
(Thu Mar 08 2012 - 08:47:45 PST)
Re: [AMBER] Dihedral analysis
g t
(Tue Mar 13 2012 - 10:41:45 PDT)
[AMBER] Velocity
kirtana S
(Wed Mar 07 2012 - 11:02:32 PST)
Re: [AMBER] Velocity
Adrian Roitberg
(Wed Mar 07 2012 - 11:05:50 PST)
[AMBER] SHAKE not available for parallel runs
CHAMI F.
(Wed Mar 07 2012 - 12:30:51 PST)
Re: [AMBER] SHAKE not available for parallel runs
case
(Wed Mar 07 2012 - 14:55:54 PST)
[AMBER] Question about output files
lnedialkova.gmail.com
(Wed Mar 07 2012 - 14:18:42 PST)
Re: [AMBER] Question about output files
case
(Wed Mar 07 2012 - 14:59:08 PST)
[AMBER] Comparison of the results
manikanthan bhavaraju
(Wed Mar 07 2012 - 14:23:54 PST)
[AMBER] Fwd: Comparison of the results
manikanthan bhavaraju
(Wed Mar 07 2012 - 22:31:48 PST)
Re: [AMBER] Comparison of the results
Jason Swails
(Thu Mar 08 2012 - 14:00:20 PST)
Re: [AMBER] Comparison of the results
manikanthan bhavaraju
(Thu Mar 08 2012 - 14:19:50 PST)
[AMBER] Harmonic Restraint in pmemd.cuda
Aron Broom
(Wed Mar 07 2012 - 15:01:37 PST)
Re: [AMBER] Harmonic Restraint in pmemd.cuda
Adrian Roitberg
(Wed Mar 07 2012 - 15:10:07 PST)
Re: [AMBER] Harmonic Restraint in pmemd.cuda
Aron Broom
(Wed Mar 07 2012 - 15:14:40 PST)
Re: [AMBER] Harmonic Restraint in pmemd.cuda
Adrian Roitberg
(Wed Mar 07 2012 - 15:16:33 PST)
[AMBER] How to get the information of hydrophobic contact?
qiao xue
(Wed Mar 07 2012 - 19:03:48 PST)
Re: [AMBER] How to get the information of hydrophobic contact?
g t
(Tue Mar 13 2012 - 10:39:44 PDT)
[AMBER] Viewing with VMD bonds set by the "bond" command
Francesco Pietra
(Wed Mar 07 2012 - 23:59:23 PST)
Re: [AMBER] Viewing with VMD bonds set by the "bond" command
Lorenzo Gontrani
(Thu Mar 08 2012 - 00:42:00 PST)
Re: [AMBER] Viewing with VMD bonds set by the "bond" command
Francesco Pietra
(Thu Mar 08 2012 - 01:48:48 PST)
Re: [AMBER] Viewing with VMD bonds set by the "bond" command
Lorenzo Gontrani
(Thu Mar 08 2012 - 02:21:57 PST)
Re: [AMBER] Viewing with VMD bonds set by the "bond" command
Francesco Pietra
(Thu Mar 08 2012 - 03:01:34 PST)
Re: [AMBER] Viewing with VMD bonds set by the "bond" command
FyD
(Thu Mar 08 2012 - 03:22:40 PST)
Re: [AMBER] Viewing with VMD bonds set by the "bond" command
Francesco Pietra
(Thu Mar 08 2012 - 03:30:29 PST)
Re: [AMBER] Viewing with VMD bonds set by the "bond" command
FyD
(Thu Mar 08 2012 - 03:48:31 PST)
Re: [AMBER] Viewing with VMD bonds set by the "bond" command
francesco oteri
(Thu Mar 08 2012 - 06:27:46 PST)
Re: [AMBER] Viewing with VMD bonds set by the "bond" command
Francesco Pietra
(Thu Mar 08 2012 - 10:27:58 PST)
[AMBER] Fwd: vmd-l: Re: Viewing with VMD bonds set by the "bond" command
Francesco Pietra
(Thu Mar 08 2012 - 23:39:17 PST)
Re: [AMBER] Viewing with VMD bonds set by the "bond" command
FyD
(Fri Mar 09 2012 - 10:10:27 PST)
[AMBER] Base stacking
amir abbasi
(Thu Mar 08 2012 - 03:13:51 PST)
Re: [AMBER] Base stacking
amirhossein taghavi
(Thu Mar 08 2012 - 09:17:06 PST)
Re: [AMBER] Base stacking
amirhossein taghavi
(Thu Mar 08 2012 - 09:18:27 PST)
Re: [AMBER] Base stacking
amir abbasi
(Thu Mar 08 2012 - 10:11:12 PST)
Re: [AMBER] Base stacking
Ilyas Yildirim
(Thu Mar 08 2012 - 10:39:13 PST)
Re: [AMBER] Base stacking
francesco oteri
(Thu Mar 08 2012 - 11:00:49 PST)
Re: [AMBER] Base stacking
amir abbasi
(Thu Mar 08 2012 - 11:10:11 PST)
Re: [AMBER] Base stacking
amirhossein taghavi
(Fri Mar 09 2012 - 07:33:51 PST)
[AMBER] How to convert multiple mdcrd files to single files with minimium size?
Catein Catherine
(Thu Mar 08 2012 - 07:47:26 PST)
Re: [AMBER] How to convert multiple mdcrd files to single files with minimium size?
Marc van der Kamp
(Thu Mar 08 2012 - 07:53:35 PST)
Re: [AMBER] How to convert multiple mdcrd files to single files with minimium size?
Aron Broom
(Thu Mar 08 2012 - 08:08:47 PST)
[AMBER] NAB segmentation fault
Michael F. Bruist
(Thu Mar 08 2012 - 08:03:12 PST)
Re: [AMBER] NAB segmentation fault
David A. Case
(Sun Mar 11 2012 - 10:57:16 PDT)
Re: [AMBER] NAB segmentation fault
Michael F. Bruist
(Mon Mar 12 2012 - 11:34:46 PDT)
Re: [AMBER] NAB segmentation fault
David A. Case
(Tue Mar 13 2012 - 00:28:08 PDT)
Re: [AMBER] NAB segmentation fault
Michael F. Bruist
(Fri Mar 16 2012 - 09:32:33 PDT)
Re: [AMBER] NAB segmentation fault
Brian Wolfe
(Tue Mar 20 2012 - 17:34:19 PDT)
Re: [AMBER] NAB segmentation fault
case
(Tue Mar 20 2012 - 18:26:52 PDT)
[AMBER] saltconc and string parameters in MM/PB(GB)SA
mish
(Thu Mar 08 2012 - 09:34:00 PST)
Re: [AMBER] saltconc and string parameters in MM/PB(GB)SA
Thomas Cheatham III
(Thu Mar 08 2012 - 10:00:30 PST)
Re: [AMBER] saltconc and string parameters in MM/PB(GB)SA
mish
(Thu Mar 08 2012 - 11:10:10 PST)
Re: [AMBER] saltconc and string parameters in MM/PB(GB)SA
Aron Broom
(Thu Mar 08 2012 - 11:21:44 PST)
[AMBER] Can I use Amber 10 PRMTOP with Amber 11?
Kasprzak, Wojciech (NIH/NCI) [C]
(Thu Mar 08 2012 - 10:40:32 PST)
Re: [AMBER] Can I use Amber 10 PRMTOP with Amber 11?
Jason Swails
(Thu Mar 08 2012 - 12:41:53 PST)
[AMBER] Mac OSX 10.7
George Tzotzos
(Thu Mar 08 2012 - 11:05:05 PST)
Re: [AMBER] Mac OSX 10.7
Jason Swails
(Thu Mar 08 2012 - 12:36:00 PST)
[AMBER] Hydrogen bond analysis
tdo.chem.ucsb.edu
(Thu Mar 08 2012 - 23:48:00 PST)
Re: [AMBER] Hydrogen bond analysis
Daniel Roe
(Fri Mar 09 2012 - 04:34:41 PST)
[AMBER] separated thermostat in AMBER
mjyang
(Fri Mar 09 2012 - 05:25:57 PST)
Re: [AMBER] separated thermostat in AMBER
David A Case
(Fri Mar 09 2012 - 06:54:24 PST)
Re: [AMBER] compiler-dependent error: "Invalid atom or grouping specified in restraint."
Jan-Philip Gehrcke
(Fri Mar 09 2012 - 06:28:38 PST)
Re: [AMBER] compiler-dependent error: "Invalid atom or grouping specified in restraint."
David A. Case
(Sun Mar 11 2012 - 10:54:23 PDT)
Re: [AMBER] compiler-dependent error: "Invalid atom or grouping specified in restraint."
Jason Swails
(Sun Mar 11 2012 - 14:42:36 PDT)
[AMBER] Job Opening at Simbios/Stanford University
Ross Walker
(Fri Mar 09 2012 - 13:19:54 PST)
[AMBER] Energy and Coordinate Outputs
David Minh
(Fri Mar 09 2012 - 13:47:53 PST)
Re: [AMBER] Energy and Coordinate Outputs
David Case
(Fri Mar 09 2012 - 17:37:45 PST)
Re: [AMBER] Energy and Coordinate Outputs
David Minh
(Fri Mar 09 2012 - 18:26:39 PST)
Re: [AMBER] Energy and Coordinate Outputs
David A. Case
(Sat Mar 10 2012 - 10:13:00 PST)
Re: [AMBER] Energy and Coordinate Outputs
David Minh
(Mon Mar 12 2012 - 08:55:38 PDT)
Re: [AMBER] Energy and Coordinate Outputs
Jason Swails
(Tue Mar 13 2012 - 15:22:11 PDT)
Re: [AMBER] Energy and Coordinate Outputs
David A. Case
(Wed Mar 14 2012 - 14:15:58 PDT)
Re: [AMBER] Energy and Coordinate Outputs
David Minh
(Sat Mar 17 2012 - 05:03:28 PDT)
[AMBER] Amber10 paralel installation
Shaandar Nyamtulga
(Fri Mar 09 2012 - 19:06:01 PST)
Re: [AMBER] Amber10 paralel installation
Jason Swails
(Sat Mar 10 2012 - 13:08:21 PST)
Re: [AMBER] Energy and Coordinate Outputs
David A. Case
(Wed Mar 14 2012 - 14:49:53 PDT)
[AMBER] Amber11 Intel compiler version 12 make parallel fail
Andrew Petersen
(Fri Mar 09 2012 - 14:34:32 PST)
Re: [AMBER] Amber11 Intel compiler version 12 make parallel fail
David Case
(Fri Mar 09 2012 - 17:44:03 PST)
[AMBER] asking about mden
setyanto md
(Sun Mar 11 2012 - 22:33:57 PDT)
Re: [AMBER] asking about mden
Ben Roberts
(Sun Mar 11 2012 - 23:35:11 PDT)
Re: [AMBER] asking about mden
setyanto md
(Mon Mar 12 2012 - 03:26:43 PDT)
[AMBER] April 3 deadline for application for ACS computational chemistry awards for the Fall 2012 national meeting
Carlos Simmerling
(Mon Mar 12 2012 - 10:02:19 PDT)
[AMBER] binding free energy
kirtana S
(Tue Mar 13 2012 - 00:35:19 PDT)
Re: [AMBER] binding free energy
Sushil Mishra
(Tue Mar 13 2012 - 00:55:33 PDT)
Re: [AMBER] binding free energy
David A. Case
(Wed Mar 14 2012 - 14:16:20 PDT)
Re: [AMBER] binding free energy
David A. Case
(Wed Mar 14 2012 - 14:49:23 PDT)
Re: [AMBER] binding free energy
David A Case
(Thu Mar 15 2012 - 05:51:43 PDT)
[AMBER] Use of SLEF1 force field in Amber
Gonzalo Jimenez
(Tue Mar 13 2012 - 00:56:54 PDT)
Re: [AMBER] Use of SLEF1 force field in Amber
CHAMI F.
(Wed Mar 14 2012 - 11:52:05 PDT)
Re: [AMBER] Use of SLEF1 force field in Amber
Gonzalo Jimenez
(Wed Mar 14 2012 - 16:40:40 PDT)
[AMBER] tleap and water molecules
Enrico Caldarulo
(Tue Mar 13 2012 - 03:05:36 PDT)
[AMBER] R: tleap and water molecules
Giovanni Pavan
(Tue Mar 13 2012 - 03:19:05 PDT)
[AMBER] Replica Exchange
Rajendra Sharma
(Tue Mar 13 2012 - 08:08:06 PDT)
Re: [AMBER] Replica Exchange
Dmitry Mukha
(Tue Mar 13 2012 - 13:34:23 PDT)
Re: [AMBER] Replica Exchange
Rajendra Sharma
(Wed Mar 14 2012 - 08:22:38 PDT)
Re: [AMBER] Replica Exchange
Indrajit Deb
(Wed Mar 14 2012 - 08:29:19 PDT)
Re: [AMBER] Replica Exchange
Carlos Simmerling
(Wed Mar 14 2012 - 08:29:16 PDT)
Re: [AMBER] Replica Exchange
Alex Rodriguez
(Wed Mar 14 2012 - 08:32:40 PDT)
Re: [AMBER] Replica Exchange
Logan Ahlstrom
(Wed Mar 14 2012 - 08:34:59 PDT)
Re: [AMBER] Replica Exchange
Adrian Roitberg
(Wed Mar 14 2012 - 08:40:46 PDT)
[AMBER] MMPBSA
George Tzotzos
(Tue Mar 13 2012 - 10:06:14 PDT)
Re: [AMBER] MMPBSA
Aron Broom
(Tue Mar 13 2012 - 10:13:04 PDT)
Re: [AMBER] MMPBSA
George Tzotzos
(Tue Mar 13 2012 - 10:26:43 PDT)
Re: [AMBER] MMPBSA
Dmitry Mukha
(Tue Mar 13 2012 - 12:19:19 PDT)
Re: [AMBER] MMPBSA
George Tzotzos
(Tue Mar 13 2012 - 12:28:12 PDT)
Re: [AMBER] MMPBSA
Dmitry Mukha
(Tue Mar 13 2012 - 13:15:21 PDT)
Re: [AMBER] MMPBSA
George Tzotzos
(Tue Mar 13 2012 - 13:43:36 PDT)
[AMBER] MMPBSA
George Tzotzos
(Tue Mar 13 2012 - 10:08:47 PDT)
[AMBER] PBSA sprob question
Jesper Sørensen
(Tue Mar 13 2012 - 13:49:09 PDT)
Re: [AMBER] PBSA sprob question
Qin Cai
(Tue Mar 13 2012 - 15:13:42 PDT)
Re: [AMBER] PBSA sprob question
Jesper Sørensen
(Tue Mar 13 2012 - 15:58:18 PDT)
Re: [AMBER] PBSA sprob question
Qin Cai
(Tue Mar 13 2012 - 16:46:48 PDT)
Re: [AMBER] PBSA sprob question
Jesper Sørensen
(Wed Mar 14 2012 - 08:57:50 PDT)
Re: [AMBER] Force Field Parameterization -- Torsion Potentials
Ismail, Mohd F.
(Tue Mar 13 2012 - 15:08:48 PDT)
Re: [AMBER] Force Field Parameterization -- Torsion Potentials
Ismail, Mohd F.
(Tue Mar 13 2012 - 15:14:08 PDT)
Re: [AMBER] Force Field Parameterization -- Torsion Potentials
Karl N. Kirschner
(Wed Mar 14 2012 - 04:53:23 PDT)
Re: [AMBER] Force Field Parameterization -- Torsion Potentials
Ismail, Mohd F.
(Thu Mar 15 2012 - 22:31:02 PDT)
Re: [AMBER] Force Field Parameterization -- Torsion Potentials
Karl N. Kirschner
(Mon Mar 19 2012 - 05:50:46 PDT)
[AMBER] Extra Bonds For Water
Kyle Greenway
(Tue Mar 13 2012 - 15:37:33 PDT)
Re: [AMBER] Extra Bonds For Water
Adrian Roitberg
(Tue Mar 13 2012 - 15:44:59 PDT)
[AMBER] ptraj: Sort trajectory based on protein-ligand distance
tdo.chem.ucsb.edu
(Tue Mar 13 2012 - 18:27:05 PDT)
Re: [AMBER] ptraj: Sort trajectory based on protein-ligand distance
g t
(Wed Mar 14 2012 - 11:37:31 PDT)
[AMBER] The value of Delta G is positive after MMPBSA calculation for metalloprotein
JiYuan Liu
(Tue Mar 13 2012 - 20:02:24 PDT)
[AMBER] Amber 10 parallel installation error
Shaandar Nyamtulga
(Wed Mar 14 2012 - 00:19:03 PDT)
Re: [AMBER] Amber 10 parallel installation error
David A Case
(Fri Mar 16 2012 - 05:20:17 PDT)
[AMBER] antechamber error
Syed Tarique Moin
(Wed Mar 14 2012 - 03:59:45 PDT)
Re: [AMBER] antechamber error
David A Case
(Fri Mar 16 2012 - 05:16:22 PDT)
[AMBER] both parallel and serial
amir abbasi
(Wed Mar 14 2012 - 06:57:34 PDT)
Re: [AMBER] both parallel and serial
Jason Swails
(Wed Mar 14 2012 - 07:10:59 PDT)
[AMBER] Amber10 parallel installation test example run error
Shaandar Nyamtulga
(Wed Mar 14 2012 - 20:50:37 PDT)
Re: [AMBER] Amber10 parallel installation test example run error
Daniel Roe
(Thu Mar 15 2012 - 03:16:25 PDT)
[AMBER] Amber10 parallel installation test error
Shaandar Nyamtulga
(Wed Mar 14 2012 - 22:48:45 PDT)
Re: [AMBER] Amber10 parallel installation test error
David A Case
(Thu Mar 15 2012 - 12:29:09 PDT)
[AMBER] simulation with metal-containing ligands
Fati
(Thu Mar 15 2012 - 05:01:04 PDT)
[AMBER] Announcement: Large biomolecule benchmark report
Hannes Loeffler
(Thu Mar 15 2012 - 05:50:10 PDT)
[AMBER] puting restrains
Urszula Uciechowska
(Thu Mar 15 2012 - 06:24:26 PDT)
Re: [AMBER] puting restrains
Brian Radak
(Thu Mar 15 2012 - 06:59:11 PDT)
[AMBER] Is it possible to cluster several mdcrd files based on a dihedral angles of a particular residues?
Catein Catherine
(Thu Mar 15 2012 - 07:16:56 PDT)
Re: [AMBER] puting restrains
Urszula Uciechowska
(Fri Mar 16 2012 - 04:01:13 PDT)
[AMBER] rigid body simulation
Qian Wang
(Thu Mar 15 2012 - 08:19:06 PDT)
Re: [AMBER] rigid body simulation
David A Case
(Thu Mar 15 2012 - 12:30:40 PDT)
Re: [AMBER] rigid body simulation
Ilyas Yildirim
(Thu Mar 15 2012 - 12:36:48 PDT)
[AMBER] restrain water in a solvatecap
Yi An
(Thu Mar 15 2012 - 10:05:22 PDT)
[AMBER] restrain water in a solvatecap
Yi An
(Mon Mar 19 2012 - 13:01:44 PDT)
Re: [AMBER] restrain water in a solvatecap
liu junjun
(Mon Mar 19 2012 - 20:40:22 PDT)
[AMBER] on the AMBER advanced tutorial 3 MM-PBSA
Wholly Peach
(Thu Mar 15 2012 - 17:18:01 PDT)
Re: [AMBER] on the AMBER advanced tutorial 3 MM-PBSA
Bill Miller III
(Sat Mar 17 2012 - 11:19:03 PDT)
Re: [AMBER] on the AMBER advanced tutorial 3 MM-PBSA
Aron Broom
(Sat Mar 17 2012 - 11:40:25 PDT)
[AMBER] the problem of RAMD
xiaojiong
(Fri Mar 16 2012 - 02:02:50 PDT)
Re: [AMBER] the problem of RAMD
Vlad Cojocaru
(Fri Mar 16 2012 - 03:52:47 PDT)
[AMBER] MMPBSA, in parallel?
Fernando Blanco
(Fri Mar 16 2012 - 05:30:17 PDT)
Re: [AMBER] MMPBSA, in parallel?
Jason Swails
(Fri Mar 16 2012 - 06:41:07 PDT)
[AMBER] mpi-allreduce in AMBER11
Carlos Sosa
(Fri Mar 16 2012 - 06:23:16 PDT)
Re: [AMBER] mpi-allreduce in AMBER11
Jason Swails
(Fri Mar 16 2012 - 06:38:40 PDT)
Re: [AMBER] mpi-allreduce in AMBER11
Carlos Sosa
(Fri Mar 16 2012 - 09:36:59 PDT)
[AMBER] Amber for Cuda on Mac OSX
George Tzotzos
(Fri Mar 16 2012 - 07:35:38 PDT)
Re: [AMBER] Amber for Cuda on Mac OSX
Jason Swails
(Fri Mar 16 2012 - 12:03:52 PDT)
[AMBER] MMPBSA.py - Internal energy
George Tzotzos
(Fri Mar 16 2012 - 11:58:40 PDT)
Re: [AMBER] MMPBSA.py - Internal energy
Jason Swails
(Fri Mar 16 2012 - 12:05:58 PDT)
Re: [AMBER] MMPBSA.py - Internal energy
George Tzotzos
(Fri Mar 16 2012 - 12:13:40 PDT)
[AMBER] Implicit MD run
Aditya Padhi
(Fri Mar 16 2012 - 21:29:00 PDT)
[AMBER] No Na molecule type for genion
Wholly Peach
(Fri Mar 16 2012 - 22:45:32 PDT)
Re: [AMBER] No Na molecule type for genion
raghav singh
(Fri Mar 16 2012 - 22:57:05 PDT)
Re: [AMBER] No Na molecule type for genion
M. L. Dodson
(Sat Mar 17 2012 - 06:40:06 PDT)
Re: [AMBER] Implicit MD run
Aron Broom
(Fri Mar 16 2012 - 22:53:08 PDT)
Re: [AMBER] Implicit MD run
Aditya Padhi
(Fri Mar 16 2012 - 22:57:20 PDT)
Re: [AMBER] Implicit MD run
Aron Broom
(Fri Mar 16 2012 - 23:06:13 PDT)
Re: [AMBER] Implicit MD run
Aditya Padhi
(Fri Mar 16 2012 - 23:19:21 PDT)
Re: [AMBER] Implicit MD run
Carlos Simmerling
(Sat Mar 17 2012 - 04:20:00 PDT)
Re: [AMBER] Implicit MD run
Aditya Padhi
(Sun Mar 18 2012 - 21:30:51 PDT)
Re: [AMBER] Implicit MD run
Carlos Simmerling
(Mon Mar 19 2012 - 03:30:27 PDT)
Re: [AMBER] Implicit MD run
Aditya Padhi
(Mon Mar 19 2012 - 04:11:35 PDT)
Re: [AMBER] Implicit MD run
Carlos Simmerling
(Mon Mar 19 2012 - 05:42:34 PDT)
Re: [AMBER] Implicit MD run
Aditya Padhi
(Mon Mar 19 2012 - 22:52:57 PDT)
Re: [AMBER] Implicit MD run
Carlos Simmerling
(Tue Mar 20 2012 - 04:02:13 PDT)
Re: [AMBER] Implicit MD run
Aditya Padhi
(Tue Mar 20 2012 - 04:12:04 PDT)
[AMBER] PB with inp=2 doesn't recognize ff10 atom types?
David Minh
(Sat Mar 17 2012 - 11:10:45 PDT)
[AMBER] Fwd: PB with inp=2 doesn't recognize ff10 atom types?
Ray Luo, Ph.D.
(Sat Mar 17 2012 - 19:33:14 PDT)
Re: [AMBER] PB with inp=2 doesn't recognize ff10 atom types?
Qin Cai
(Mon Mar 19 2012 - 15:15:38 PDT)
[AMBER] Amber8 and RAMD
xiaojiong
(Sun Mar 18 2012 - 01:59:00 PDT)
Re: [AMBER] Amber8 and RAMD
Vlad Cojocaru
(Sun Mar 18 2012 - 02:54:15 PDT)
[AMBER] is GB/SA suitable for nonaqueous solvent?
Junjian Miao
(Sun Mar 18 2012 - 07:21:42 PDT)
Re: [AMBER] is GB/SA suitable for nonaqueous solvent?
Carlos Simmerling
(Sun Mar 18 2012 - 07:25:35 PDT)
Re: [AMBER] is GB/SA suitable for nonaqueous solvent?
Dean Cuebas
(Mon Mar 19 2012 - 09:51:28 PDT)
Re: [AMBER] is GB/SA suitable for nonaqueous solvent?
Alex Rodriguez
(Mon Mar 19 2012 - 10:25:15 PDT)
Re: [AMBER] Which method is the best way to solve metalloprotein?MCPB or Only consider Electrostatic and VDW
Ben Roberts
(Mon Mar 19 2012 - 01:30:42 PDT)
Re: [AMBER] Which method is the best way to solve metalloprotein?MCPB or Only consider Electrostatic and VDW
JiYuan Liu
(Mon Mar 19 2012 - 05:51:51 PDT)
Re: [AMBER] Which method is the best way to solve metalloprotein?MCPB or Only consider Electrostatic and VDW
FyD
(Tue Mar 20 2012 - 09:26:58 PDT)
[AMBER] Problems with tetrahedral Al in antechamber
Gonzalo Jimenez
(Mon Mar 19 2012 - 01:44:19 PDT)
Re: [AMBER] Problems with tetrahedral Al in antechamber
case
(Mon Mar 19 2012 - 05:11:32 PDT)
[AMBER] Problems with tetrahedral Al in antechamber
Gonzalo Jimenez
(Mon Mar 19 2012 - 02:16:35 PDT)
[AMBER] To generate more than one structure using ptraj
Souvik Sur
(Mon Mar 19 2012 - 06:36:31 PDT)
Re: [AMBER] To generate more than one structure using ptraj
Jason Swails
(Mon Mar 19 2012 - 08:17:12 PDT)
Re: [AMBER] To generate more than one structure using ptraj
Souvik Sur
(Mon Mar 19 2012 - 22:56:44 PDT)
Re: [AMBER] To generate more than one structure using ptraj
Jason Swails
(Tue Mar 20 2012 - 10:04:48 PDT)
[AMBER] charges for ion and surrounding residues at the active site
JORGE IULEK
(Mon Mar 19 2012 - 12:51:05 PDT)
[AMBER] How to calculate the energy contributed by hydrogen bonds?
bin wang
(Mon Mar 19 2012 - 14:00:51 PDT)
Re: [AMBER] How to calculate the energy contributed by hydrogen bonds?
Jason Swails
(Mon Mar 19 2012 - 19:27:01 PDT)
Re: [AMBER] How to calculate the energy contributed by hydrogen bonds?
bin wang
(Tue Mar 20 2012 - 07:17:29 PDT)
Re: [AMBER] How to calculate the energy contributed by hydrogen bonds?
Jason Swails
(Tue Mar 20 2012 - 10:01:24 PDT)
Re: [AMBER] How to calculate the energy contributed by hydrogen bonds?
bin wang
(Wed Mar 21 2012 - 20:58:22 PDT)
[AMBER] charges for ion and surrounding residues at the active site
Jorge Iulek
(Mon Mar 19 2012 - 17:33:10 PDT)
Re: [AMBER] charges for ion and surrounding residues at the active site
FyD
(Tue Mar 20 2012 - 04:55:07 PDT)
Re: [AMBER] charges for ion and surrounding residues at the active site
Jorge Iulek
(Tue Mar 20 2012 - 17:28:36 PDT)
Re: [AMBER] charges for ion and surrounding residues at the active site
FyD
(Wed Mar 21 2012 - 00:02:44 PDT)
Re: [AMBER] charges for ion and surrounding residues at the active site
Jorge Iulek
(Wed Mar 21 2012 - 09:07:08 PDT)
[AMBER] organics solvent radius
setyanto md
(Mon Mar 19 2012 - 23:04:23 PDT)
[AMBER] MD and RAMD
xiaojiong
(Tue Mar 20 2012 - 00:12:20 PDT)
Re: [AMBER] MD and RAMD
Vlad Cojocaru
(Tue Mar 20 2012 - 00:59:52 PDT)
[AMBER] Is there some constrains required for the REMD simulation on disaccharide in Amber11?
黄恋琦
(Tue Mar 20 2012 - 00:42:05 PDT)
[AMBER] Fast ibelly?
David Minh
(Tue Mar 20 2012 - 08:29:00 PDT)
Re: [AMBER] Fast ibelly?
Ross Walker
(Tue Mar 20 2012 - 10:09:47 PDT)
Re: [AMBER] Fast ibelly?
David Minh
(Tue Mar 20 2012 - 11:10:15 PDT)
Re: [AMBER] Fast ibelly?
Ross Walker
(Tue Mar 20 2012 - 11:31:10 PDT)
Re: [AMBER] Fast ibelly?
David A Case
(Tue Mar 20 2012 - 13:22:15 PDT)
Re: [AMBER] Fast ibelly?
David Minh
(Wed Mar 21 2012 - 07:22:59 PDT)
[AMBER] GBSA - surface tension question for calculation of ΔGnonpolar
g t
(Tue Mar 20 2012 - 10:34:48 PDT)
Re: [AMBER] GBSA - surface tension question for calculation of ΔGnonpolar
Carlos Simmerling
(Tue Mar 20 2012 - 10:44:37 PDT)
Re: [AMBER] GBSA - surface tension question for calculation of ΔGnonpolar
g t
(Tue Mar 20 2012 - 16:02:06 PDT)
Re: [AMBER] GBSA - surface tension question for calculation of ΔGnonpolar
Carlos Simmerling
(Wed Mar 21 2012 - 04:08:30 PDT)
Re: [AMBER] GBSA - surface tension question for calculation of ΔGnonpolar
g t
(Wed Mar 21 2012 - 23:18:34 PDT)
[AMBER] disulfide bond warnings
George Tzotzos
(Tue Mar 20 2012 - 11:30:29 PDT)
Re: [AMBER] disulfide bond warnings
Jason Swails
(Tue Mar 20 2012 - 16:01:09 PDT)
Re: [AMBER] disulfide bond warnings
George Tzotzos
(Tue Mar 20 2012 - 16:19:41 PDT)
Re: [AMBER] disulfide bond warnings
Jason Swails
(Tue Mar 20 2012 - 18:45:32 PDT)
[AMBER] Water coordinated with transition metal
ashwini gupta
(Tue Mar 20 2012 - 23:36:40 PDT)
Re: [AMBER] Water coordinated with transition metal
Ben Roberts
(Wed Mar 21 2012 - 00:21:35 PDT)
Re: [AMBER] Water coordinated with transition metal
ashwini gupta
(Wed Mar 21 2012 - 02:09:04 PDT)
Re: [AMBER] Water coordinated with transition metal
Ben Roberts
(Wed Mar 21 2012 - 02:40:50 PDT)
Re: [AMBER] Water coordinated with transition metal
ashwini gupta
(Wed Mar 21 2012 - 03:33:29 PDT)
Re: [AMBER] Water coordinated with transition metal
Ben Roberts
(Wed Mar 21 2012 - 03:41:10 PDT)
Re: [AMBER] Water coordinated with transition metal
ashwini gupta
(Wed Mar 21 2012 - 04:40:32 PDT)
[AMBER] About ANAL problem: Amber
王伟
(Wed Mar 21 2012 - 04:16:23 PDT)
Re: [AMBER] About ANAL problem: Amber
David A Case
(Wed Mar 21 2012 - 04:55:01 PDT)
Re: [AMBER] About ANAL problem: Amber
Soumya Lipsa Rath
(Wed Mar 21 2012 - 23:25:36 PDT)
Re: [AMBER] About ANAL problem: Amber
David A Case
(Thu Mar 22 2012 - 05:14:10 PDT)
Re: [AMBER] About ANAL problem: Amber
王伟
(Sat Mar 24 2012 - 00:41:00 PDT)
Re: [AMBER] About ANAL problem: Amber
王伟
(Thu Mar 22 2012 - 06:14:43 PDT)
[AMBER] Amber 11 Compilation Error (again!)
Adam Jion
(Wed Mar 21 2012 - 04:57:37 PDT)
Re: [AMBER] Amber 11 Compilation Error (again!)
Jason Swails
(Wed Mar 21 2012 - 05:16:25 PDT)
[AMBER] Converting Gromacs coordinate file to Amber input files for molecular dynamics
Adam Jion
(Wed Mar 21 2012 - 10:00:23 PDT)
Re: [AMBER] Converting Gromacs coordinate file to Amber input files formolecular dynamics
Vlad Cojocaru
(Wed Mar 21 2012 - 10:10:52 PDT)
Re: [AMBER] Converting Gromacs coordinate file to Amber input files for molecular dynamics
Alex Rodriguez
(Wed Mar 21 2012 - 10:13:23 PDT)
[AMBER] External Force Method in pmemd.cuda
Ismail, Mohd F.
(Wed Mar 21 2012 - 10:28:43 PDT)
Re: [AMBER] External Force Method in pmemd.cuda
Jason Swails
(Wed Mar 21 2012 - 10:35:52 PDT)
Re: [AMBER] External Force Method in pmemd.cuda
Ismail, Mohd F.
(Wed Mar 21 2012 - 10:46:59 PDT)
Re: [AMBER] Test if MD converged or not.
g t
(Thu Mar 22 2012 - 00:14:36 PDT)
Re: [AMBER] problem in output file of the awk script in tutorial A6
g t
(Thu Mar 22 2012 - 00:24:30 PDT)
[AMBER] Problem in Amber installation
vishal Nemaysh
(Thu Mar 22 2012 - 01:06:08 PDT)
Re: [AMBER] Problem in Amber installation
David A Case
(Thu Mar 22 2012 - 05:18:32 PDT)
Re: [AMBER] Problem in Amber installation
Jason Swails
(Thu Mar 22 2012 - 06:09:39 PDT)
Re: [AMBER] Problem in Amber installation
vishal Nemaysh
(Wed Mar 28 2012 - 22:01:57 PDT)
Re: [AMBER] Problem in Amber installation
Jason Swails
(Thu Mar 29 2012 - 04:49:37 PDT)
Re: [AMBER] Problem in Amber installation
setyanto md
(Fri Mar 30 2012 - 02:21:57 PDT)
Re: [AMBER] Problem in Amber installation
Jason Swails
(Fri Mar 30 2012 - 07:09:11 PDT)
[AMBER] Non - integral charge o unperturbed unit
ashwini gupta
(Thu Mar 22 2012 - 03:08:44 PDT)
Re: [AMBER] Non - integral charge o unperturbed unit
FyD
(Fri Mar 23 2012 - 07:58:26 PDT)
[AMBER] Is it possible to just calculate translational and rotational entropy?
Tan Yaw Sing
(Thu Mar 22 2012 - 03:57:57 PDT)
Re: [AMBER] Is it possible to just calculate translational and rotational entropy?
David A Case
(Thu Mar 22 2012 - 05:23:10 PDT)
[AMBER] amber parameters for cytochrome c
Gurunath Katagi
(Thu Mar 22 2012 - 19:42:03 PDT)
Re: [AMBER] amber parameters for cytochrome c
Jason Swails
(Sat Mar 24 2012 - 08:49:23 PDT)
[AMBER] atom type of Sulphur in CYS/CYM (MCPB)
ashwini gupta
(Thu Mar 22 2012 - 23:39:03 PDT)
Re: [AMBER] atom type of Sulphur in CYS/CYM (MCPB)
Tong Zhu
(Fri Mar 23 2012 - 02:12:32 PDT)
Re: [AMBER] atom type of Sulphur in CYS/CYM (MCPB)
Ben Roberts
(Sun Mar 25 2012 - 11:02:04 PDT)
Re: [AMBER] atom type of Sulphur in CYS/CYM (MCPB)
ashwini gupta
(Sun Mar 25 2012 - 21:33:53 PDT)
[AMBER] Amber10 parallel installation test example
Shaandar Nyamtulga
(Fri Mar 23 2012 - 01:08:31 PDT)
Re: [AMBER] Amber10 parallel installation test example
David A Case
(Fri Mar 23 2012 - 05:21:38 PDT)
[AMBER] esp and resp comparison
jun kit
(Fri Mar 23 2012 - 01:23:49 PDT)
Re: [AMBER] esp and resp comparison
FyD
(Fri Mar 23 2012 - 08:01:27 PDT)
[AMBER] parameters for Lys-sugar
Urszula Uciechowska
(Fri Mar 23 2012 - 05:15:38 PDT)
Re: [AMBER] parameters for Lys-sugar
FyD
(Fri Mar 23 2012 - 08:06:35 PDT)
Re: [AMBER] parameters for Lys-sugar
Lachele Foley (Lists)
(Fri Mar 23 2012 - 08:11:15 PDT)
Re: [AMBER] parameters for Lys-sugar
Urszula Uciechowska
(Fri Mar 23 2012 - 08:26:19 PDT)
Re: [AMBER] parameters for Lys-sugar
FyD
(Fri Mar 23 2012 - 09:11:51 PDT)
Re: [AMBER] parameters for Lys-sugar
Lachele Foley (Lists)
(Fri Mar 23 2012 - 11:01:27 PDT)
Re: [AMBER] parameters for Lys-sugar
Lachele Foley (Lists)
(Fri Mar 23 2012 - 12:39:04 PDT)
Re: [AMBER] parameters for Lys-sugar
FyD
(Sat Mar 24 2012 - 01:14:17 PDT)
Re: [AMBER] parameters for Lys-sugar
Lachele Foley (Lists)
(Sat Mar 24 2012 - 08:10:20 PDT)
Re: [AMBER] parameters for Lys-sugar
Urszula Uciechowska
(Sat Mar 24 2012 - 13:41:00 PDT)
Re: [AMBER] parameters for Lys-sugar
Lachele Foley (Lists)
(Sun Mar 25 2012 - 13:10:23 PDT)
Re: [AMBER] parameters for Lys-sugar
Urszula Uciechowska
(Sat Mar 24 2012 - 13:52:42 PDT)
[AMBER] Problems compiling pmemd.cuda - undefined reference to ...
Adam Jion
(Fri Mar 23 2012 - 07:15:28 PDT)
Re: [AMBER] Problems compiling pmemd.cuda - undefined reference to ...
Ross Walker
(Fri Mar 23 2012 - 09:17:06 PDT)
Re: [AMBER] Problems compiling pmemd.cuda - undefined reference to ...
Adam Jion
(Fri Mar 23 2012 - 10:22:40 PDT)
Re: [AMBER] Problems compiling pmemd.cuda - undefined reference to ...
Daniel Roe
(Fri Mar 23 2012 - 11:10:19 PDT)
Re: [AMBER] Problems compiling pmemd.cuda - undefined reference to ...
Jason Swails
(Sat Mar 24 2012 - 09:06:43 PDT)
[AMBER] About ANAL problem: Amber
王伟
(Fri Mar 23 2012 - 07:37:32 PDT)
[AMBER] Conflict between AmberTools 1.5 and Cuda
Adam Jion
(Fri Mar 23 2012 - 08:18:55 PDT)
Re: [AMBER] Conflict between AmberTools 1.5 and Cuda
Daniel Roe
(Fri Mar 23 2012 - 09:16:55 PDT)
Re: [AMBER] Conflict between AmberTools 1.5 and Cuda
Ross Walker
(Fri Mar 23 2012 - 09:19:07 PDT)
Re: [AMBER] Conflict between AmberTools 1.5 and Cuda
Adam Jion
(Fri Mar 23 2012 - 10:09:32 PDT)
Re: [AMBER] Conflict between AmberTools 1.5 and Cuda
David A Case
(Fri Mar 23 2012 - 11:11:32 PDT)
Re: [AMBER] Conflict between AmberTools 1.5 and Cuda
Adam Jion
(Sat Mar 24 2012 - 04:26:21 PDT)
Re: [AMBER] Conflict between AmberTools 1.5 and Cuda
Jan-Philip Gehrcke
(Sat Mar 24 2012 - 05:23:38 PDT)
[AMBER] GTX680
filip fratev
(Fri Mar 23 2012 - 11:37:02 PDT)
Re: [AMBER] GTX680
Ross Walker
(Fri Mar 23 2012 - 11:49:15 PDT)
Re: [AMBER] GTX680
Scott Le Grand
(Fri Mar 23 2012 - 11:57:00 PDT)
Re: [AMBER] GTX680
Scott Le Grand
(Wed Mar 28 2012 - 09:33:39 PDT)
Re: [AMBER] GTX680
Aron Broom
(Wed Mar 28 2012 - 09:54:11 PDT)
Re: [AMBER] GTX680
Scott Le Grand
(Wed Mar 28 2012 - 10:07:57 PDT)
Re: [AMBER] GTX680
Aron Broom
(Wed Mar 28 2012 - 10:30:30 PDT)
Re: [AMBER] GTX680
Scott Le Grand
(Wed Mar 28 2012 - 10:40:40 PDT)
Re: [AMBER] GTX680
Aron Broom
(Wed Mar 28 2012 - 10:45:45 PDT)
Re: [AMBER] GTX680
Ross Walker
(Wed Mar 28 2012 - 13:39:14 PDT)
Re: [AMBER] GTX680
Aron Broom
(Wed Mar 28 2012 - 15:11:26 PDT)
Re: [AMBER] GTX680
Fenley, Andrew
(Wed Mar 28 2012 - 19:33:53 PDT)
Re: [AMBER] GTX680
Scott Le Grand
(Thu Mar 29 2012 - 08:39:21 PDT)
[AMBER] ANAL
王伟
(Sat Mar 24 2012 - 00:57:41 PDT)
[AMBER] Error Compiling pmemd.cuda.MPI (i.e. Multiple GPUs)
Adam Jion
(Sat Mar 24 2012 - 06:03:58 PDT)
Re: [AMBER] Error Compiling pmemd.cuda.MPI (i.e. Multiple GPUs)
Jason Swails
(Sat Mar 24 2012 - 08:17:58 PDT)
Re: [AMBER] Error Compiling pmemd.cuda.MPI (i.e. Multiple GPUs)
Adam Jion
(Sat Mar 24 2012 - 09:38:16 PDT)
Re: [AMBER] Error Compiling pmemd.cuda.MPI (i.e. Multiple GPUs)
Scott Le Grand
(Sat Mar 24 2012 - 09:49:42 PDT)
Re: [AMBER] Error Compiling pmemd.cuda.MPI (i.e. Multiple GPUs)
Jason Swails
(Sat Mar 24 2012 - 10:06:02 PDT)
Re: [AMBER] Error Compiling pmemd.cuda.MPI (i.e. Multiple GPUs)
Adam Jion
(Sat Mar 24 2012 - 10:29:09 PDT)
Re: [AMBER] Error Compiling pmemd.cuda.MPI (i.e. Multiple GPUs)
Adam Jion
(Sat Mar 24 2012 - 17:12:48 PDT)
Re: [AMBER] Error Compiling pmemd.cuda.MPI (i.e. Multiple GPUs)
Jason Swails
(Sat Mar 24 2012 - 17:15:42 PDT)
Re: [AMBER] Error Compiling pmemd.cuda.MPI (i.e. Multiple GPUs)
Adam Jion
(Sat Mar 24 2012 - 17:45:47 PDT)
Re: [AMBER] Error Compiling pmemd.cuda.MPI (i.e. Multiple GPUs)
Jason Swails
(Sat Mar 24 2012 - 19:33:37 PDT)
Re: [AMBER] Error Compiling pmemd.cuda.MPI (i.e. Multiple GPUs)
Adam Jion
(Sat Mar 24 2012 - 20:28:04 PDT)
[AMBER] ptraj atomicfluct
George Tzotzos
(Sat Mar 24 2012 - 14:12:11 PDT)
Re: [AMBER] ptraj atomicfluct
Thomas Cheatham
(Sat Mar 24 2012 - 14:26:16 PDT)
Re: [AMBER] ptraj atomicfluct
George Tzotzos
(Sat Mar 24 2012 - 14:54:48 PDT)
[AMBER] Problems testing pmemd.cuda.MPI
Adam Jion
(Sat Mar 24 2012 - 19:21:02 PDT)
Re: [AMBER] Problems testing pmemd.cuda.MPI
Ben Roberts
(Sun Mar 25 2012 - 16:14:18 PDT)
[AMBER] ANAL
王伟
(Sat Mar 24 2012 - 20:17:43 PDT)
[AMBER] ANAL
wei wang
(Sat Mar 24 2012 - 20:32:47 PDT)
[AMBER] About ANAL
wei wang
(Sun Mar 25 2012 - 02:33:33 PDT)
Re: [AMBER] About ANAL
David A. Case
(Sun Mar 25 2012 - 07:47:38 PDT)
[AMBER] Problems with pmemd.cuda.mpi (again!)
Adam Jion
(Sun Mar 25 2012 - 04:51:53 PDT)
Re: [AMBER] Problems with pmemd.cuda.mpi (again!)
Ross Walker
(Sun Mar 25 2012 - 07:03:48 PDT)
Re: [AMBER] Problems with pmemd.cuda.mpi (again!)
Adam Jion
(Sun Mar 25 2012 - 07:34:28 PDT)
Re: [AMBER] Problems with pmemd.cuda.mpi (again!)
Jason Swails
(Sun Mar 25 2012 - 08:24:26 PDT)
Re: [AMBER] Problems with pmemd.cuda.mpi (again!)
Adam Jion
(Sun Mar 25 2012 - 09:58:48 PDT)
Re: [AMBER] Problems with pmemd.cuda.mpi (again!)
Jason Swails
(Mon Mar 26 2012 - 07:24:35 PDT)
Re: [AMBER] Problems with pmemd.cuda.mpi (again!)
Adam Jion
(Mon Mar 26 2012 - 09:13:05 PDT)
Re: [AMBER] Problems with pmemd.cuda.mpi (again!)
Jason Swails
(Mon Mar 26 2012 - 09:51:13 PDT)
Re: [AMBER] Problems with pmemd.cuda.mpi (again!)
Adam Jion
(Mon Mar 26 2012 - 10:25:30 PDT)
Re: [AMBER] Announcement: 2012 summer intern position at GSK
肖立
(Sun Mar 25 2012 - 16:24:55 PDT)
Re: [AMBER] parameters for Lys-sugar P2N file
Urszula Uciechowska
(Sun Mar 25 2012 - 23:52:33 PDT)
Re: [AMBER] parameters for Lys-sugar P2N file
FyD
(Mon Mar 26 2012 - 05:47:17 PDT)
[AMBER] MP2 for RESP
Tong Zhu
(Mon Mar 26 2012 - 01:46:36 PDT)
Re: [AMBER] MP2 for RESP
Ben Roberts
(Mon Mar 26 2012 - 13:26:07 PDT)
[AMBER] amber12
Elisa Frezza
(Mon Mar 26 2012 - 02:26:39 PDT)
Re: [AMBER] amber12
Jason Swails
(Mon Mar 26 2012 - 08:32:45 PDT)
Re: [AMBER] amber12
Ross Walker
(Mon Mar 26 2012 - 09:35:22 PDT)
Re: [AMBER] amber12
Elisa Frezza
(Tue Mar 27 2012 - 05:35:44 PDT)
Re: [AMBER] amber12
Jason Swails
(Tue Mar 27 2012 - 06:16:40 PDT)
[AMBER] Fwd: V limit
RAMON
(Mon Mar 26 2012 - 07:21:46 PDT)
Re: [AMBER] Fwd: V limit
David A Case
(Thu Mar 29 2012 - 09:18:59 PDT)
Re: [AMBER] Fwd: V limit
Ross Walker
(Thu Mar 29 2012 - 11:47:37 PDT)
Re: [AMBER] Fwd: V limit
Jason Swails
(Thu Mar 29 2012 - 12:04:41 PDT)
Re: [AMBER] Fwd: V limit
David A Case
(Thu Mar 29 2012 - 13:20:05 PDT)
[AMBER] cpptraj hbond
George Tzotzos
(Mon Mar 26 2012 - 07:26:28 PDT)
Re: [AMBER] cpptraj hbond
George Tzotzos
(Mon Mar 26 2012 - 11:13:55 PDT)
Re: [AMBER] cpptraj hbond
Daniel Roe
(Mon Mar 26 2012 - 12:06:57 PDT)
Re: [AMBER] cpptraj hbond
George Tzotzos
(Mon Mar 26 2012 - 12:10:43 PDT)
[AMBER] Amber and Short Bonds
Aronica, Pietro
(Mon Mar 26 2012 - 08:04:45 PDT)
Re: [AMBER] Amber and Short Bonds
Ross Walker
(Mon Mar 26 2012 - 09:44:30 PDT)
Re: [AMBER] Amber and Short Bonds
Aronica, Pietro
(Mon Mar 26 2012 - 10:05:41 PDT)
Re: [AMBER] Amber and Short Bonds
Jason Swails
(Mon Mar 26 2012 - 13:15:55 PDT)
Re: [AMBER] Amber and Short Bonds
Thomas Cheatham
(Mon Mar 26 2012 - 13:21:22 PDT)
Re: [AMBER] Amber and Short Bonds
Aronica, Pietro
(Mon Mar 26 2012 - 16:18:35 PDT)
Re: [AMBER] Amber and Short Bonds
Jason Swails
(Mon Mar 26 2012 - 16:47:36 PDT)
Re: [AMBER] Amber and Short Bonds
Aronica, Pietro
(Mon Mar 26 2012 - 17:02:02 PDT)
Re: [AMBER] Amber and Short Bonds
Adrian Roitberg
(Mon Mar 26 2012 - 17:08:47 PDT)
Re: [AMBER] Amber and Short Bonds
Aronica, Pietro
(Tue Mar 27 2012 - 05:24:43 PDT)
Re: [AMBER] Amber and Short Bonds
Jason Swails
(Tue Mar 27 2012 - 05:59:12 PDT)
[AMBER] TUTORIAL A1: Protein that Contains Non-Standard Residues
Bala subramanian
(Mon Mar 26 2012 - 08:23:49 PDT)
Re: [AMBER] TUTORIAL A1: Protein that Contains Non-Standard Residues
Ross Walker
(Mon Mar 26 2012 - 09:37:02 PDT)
Re: [AMBER] TUTORIAL A1: Protein that Contains Non-Standard Residues
Bala subramanian
(Mon Mar 26 2012 - 12:05:29 PDT)
Re: [AMBER] TUTORIAL A1: Protein that Contains Non-Standard Residues
FyD
(Tue Mar 27 2012 - 06:30:52 PDT)
[AMBER] compiling failure on ibm
Yubo Fan
(Mon Mar 26 2012 - 11:44:03 PDT)
Re: [AMBER] compiling failure on ibm
Scott Brozell
(Mon Mar 26 2012 - 12:20:00 PDT)
Re: [AMBER] compiling failure on ibm
Jason Swails
(Mon Mar 26 2012 - 12:51:48 PDT)
Re: [AMBER] compiling failure on ibm
Yubo Fan
(Mon Mar 26 2012 - 13:50:06 PDT)
[AMBER] Another question about Amber 12
Tong Zhu
(Mon Mar 26 2012 - 18:04:31 PDT)
Re: [AMBER] Another question about Amber 12
Ross Walker
(Tue Mar 27 2012 - 10:25:43 PDT)
Re: [AMBER] Another question about Amber 12
Tong Zhu
(Wed Mar 28 2012 - 18:51:25 PDT)
[AMBER] glycine sidechain contribution in MM-GBSA decompostion
caobb0214
(Mon Mar 26 2012 - 18:05:04 PDT)
Re: [AMBER] glycine sidechain contribution in MM-GBSA decompostion
Carlos Simmerling
(Mon Mar 26 2012 - 18:08:33 PDT)
Re: [AMBER] glycine sidechain contribution in MM-GBSA decompostion
caobb0214
(Mon Mar 26 2012 - 18:56:22 PDT)
Re: [AMBER] glycine sidechain contribution in MM-GBSA decompostion
Jason Swails
(Mon Mar 26 2012 - 21:52:10 PDT)
Re: [AMBER] glycine sidechain contribution in MM-GBSA decompostion
Carlos Simmerling
(Tue Mar 27 2012 - 03:01:13 PDT)
[AMBER] ptraj removes my ligands
DENILSON FERREIRA DE OLIVEIRA
(Mon Mar 26 2012 - 19:22:48 PDT)
Re: [AMBER] ptraj removes my ligands
Daniel Roe
(Mon Mar 26 2012 - 21:10:01 PDT)
Re: [AMBER] ptraj removes my ligands
Daniel Roe
(Fri Mar 30 2012 - 11:36:23 PDT)
[AMBER] assignment of partial charge to fullerene2160
gargi borgohai
(Tue Mar 27 2012 - 00:15:21 PDT)
Re: [AMBER] assignment of partial charge to fullerene2160
steinbrt.rci.rutgers.edu
(Tue Mar 27 2012 - 01:05:44 PDT)
Re: [AMBER] assignment of partial charge to fullerene2160
FyD
(Tue Mar 27 2012 - 05:55:04 PDT)
[AMBER] angle restraint
Elisa Frezza
(Tue Mar 27 2012 - 02:28:46 PDT)
[AMBER] AmberGS forcefield
steinbrt.rci.rutgers.edu
(Tue Mar 27 2012 - 07:57:05 PDT)
Re: [AMBER] AmberGS forcefield
Carlos Simmerling
(Tue Mar 27 2012 - 08:17:19 PDT)
[AMBER] COM
Olena Dobrovolska
(Tue Mar 27 2012 - 08:01:27 PDT)
Re: [AMBER] COM
David A. Case
(Wed Mar 28 2012 - 07:53:38 PDT)
Re: [AMBER] COM
Olena Dobrovolska
(Wed Mar 28 2012 - 08:40:02 PDT)
Re: [AMBER] COM
David A. Case
(Wed Mar 28 2012 - 12:25:45 PDT)
[AMBER] Segmentation fault
Agostino Bruno
(Wed Mar 28 2012 - 08:33:15 PDT)
Re: [AMBER] Segmentation fault
Ben Roberts
(Wed Mar 28 2012 - 13:22:06 PDT)
Re: [AMBER] Segmentation fault
Agostino Bruno
(Thu Mar 29 2012 - 01:06:09 PDT)
Re: [AMBER] Segmentation fault
Ben Roberts
(Thu Mar 29 2012 - 02:37:53 PDT)
[AMBER] how to measure atom distance in md trajectories using ptraj program
Bala Subramani
(Wed Mar 28 2012 - 10:26:21 PDT)
Re: [AMBER] how to measure atom distance in md trajectories using ptraj program
Daniel Roe
(Wed Mar 28 2012 - 10:33:39 PDT)
Re: [AMBER] how to measure atom distance in md trajectories using ptraj program
Bala Subramani
(Wed Mar 28 2012 - 11:25:41 PDT)
Re: [AMBER] how to measure atom distance in md trajectories using ptraj program
Daniel Roe
(Wed Mar 28 2012 - 12:37:04 PDT)
Re: [AMBER] how to measure atom distance in md trajectories using ptraj program
Jason Swails
(Wed Mar 28 2012 - 12:23:30 PDT)
[AMBER] error in nmode calculations
manikanthan bhavaraju
(Wed Mar 28 2012 - 11:41:04 PDT)
Re: [AMBER] error in nmode calculations
Bill Miller III
(Wed Mar 28 2012 - 12:05:14 PDT)
Re: [AMBER] error in nmode calculations
Cannon, John F.
(Wed Mar 28 2012 - 13:11:03 PDT)
Re: [AMBER] error in nmode calculations
manikanthan bhavaraju
(Wed Mar 28 2012 - 14:18:06 PDT)
Re: [AMBER] error in nmode calculations
Jason Swails
(Wed Mar 28 2012 - 14:46:54 PDT)
Re: [AMBER] error in nmode calculations
David A. Case
(Thu Mar 29 2012 - 06:09:53 PDT)
[AMBER] Problem with installation of MTKPP
setyanto md
(Wed Mar 28 2012 - 19:33:09 PDT)
Re: [AMBER] Problem with installation of MTKPP
Martin Peters
(Thu Mar 29 2012 - 01:41:58 PDT)
Re: [AMBER] Problem with installation of MTKPP
setyanto md
(Thu Mar 29 2012 - 03:55:07 PDT)
[AMBER] how to merge 10 trajectory files
BALASUBRAMANI G L
(Wed Mar 28 2012 - 21:35:42 PDT)
Re: [AMBER] how to merge 10 trajectory files
Ben Roberts
(Wed Mar 28 2012 - 21:42:41 PDT)
[AMBER] rfree: Error decoding variable 1 3 from:
Elisa Frezza
(Thu Mar 29 2012 - 06:04:47 PDT)
Re: [AMBER] rfree: Error decoding variable 1 3 from:
Jason Swails
(Thu Mar 29 2012 - 06:33:42 PDT)
Re: [AMBER] rfree: Error decoding variable 1 3 from:
Elisa Frezza
(Thu Mar 29 2012 - 06:46:30 PDT)
Re: [AMBER] rfree: Error decoding variable 1 3 from:
David A Case
(Thu Mar 29 2012 - 07:47:25 PDT)
Re: [AMBER] rfree: Error decoding variable 1 3 from:
Jason Swails
(Thu Mar 29 2012 - 11:42:44 PDT)
[AMBER] Particles moving outside of simulation box for pmemd.cuda.mpi
Adam Jion
(Thu Mar 29 2012 - 17:05:16 PDT)
Re: [AMBER] Particles moving outside of simulation box for pmemd.cuda.mpi
Aron Broom
(Thu Mar 29 2012 - 17:35:33 PDT)
Re: [AMBER] Particles moving outside of simulation box for pmemd.cuda.mpi
Ben Roberts
(Thu Mar 29 2012 - 17:38:00 PDT)
Re: [AMBER] Particles moving outside of simulation box for pmemd.cuda.mpi
Adam Jion
(Fri Mar 30 2012 - 04:08:07 PDT)
Re: [AMBER] Particles moving outside of simulation box for pmemd.cuda.mpi
Ross Walker
(Fri Mar 30 2012 - 10:34:17 PDT)
[AMBER] Amber10 parallel test example run error
Shaandar Nyamtulga
(Thu Mar 29 2012 - 23:25:32 PDT)
Re: [AMBER] Amber10 parallel test example run error
Shaandar Nyamtulga
(Fri Mar 30 2012 - 01:04:16 PDT)
[AMBER] Asking About Differences between amber force field ff10 and ff03
setyanto md
(Fri Mar 30 2012 - 02:50:59 PDT)
Re: [AMBER] Asking About Differences between amber force field ff10 and ff03
Aron Broom
(Fri Mar 30 2012 - 07:21:30 PDT)
Re: [AMBER] Asking About Differences between amber force field ff10 and ff03
David A Case
(Fri Mar 30 2012 - 09:27:54 PDT)
[AMBER] Fast moving system in targeted MD
Thomas Exner
(Fri Mar 30 2012 - 05:16:18 PDT)
[AMBER] Large Energy Jump in TMD simulation - Regarding
Fredrick Devadoss
(Fri Mar 30 2012 - 05:19:56 PDT)
Re: [AMBER] Large Energy Jump in TMD simulation - Regarding
Carlos Simmerling
(Fri Mar 30 2012 - 05:52:35 PDT)
Re: [AMBER] Large Energy Jump in TMD simulation - Regarding
Fredrick Devadoss
(Fri Mar 30 2012 - 06:34:11 PDT)
Re: [AMBER] Large Energy Jump in TMD simulation - Regarding
Carlos Simmerling
(Fri Mar 30 2012 - 06:41:13 PDT)
Re: [AMBER] Large Energy Jump in TMD simulation - Regarding
Fredrick Devadoss
(Fri Mar 30 2012 - 06:49:21 PDT)
Re: [AMBER] Large Energy Jump in TMD simulation - Regarding
Carlos Simmerling
(Fri Mar 30 2012 - 08:57:53 PDT)
Re: [AMBER] Large Energy Jump in TMD simulation - Regarding
Fredrick Devadoss
(Fri Mar 30 2012 - 11:06:02 PDT)
Re: [AMBER] Large Energy Jump in TMD simulation - Regarding
Jason Swails
(Fri Mar 30 2012 - 12:25:40 PDT)
Re: [AMBER] Large Energy Jump in TMD simulation - Regarding
Fredrick Devadoss
(Fri Mar 30 2012 - 15:15:50 PDT)
Re: [AMBER] Large Energy Jump in TMD simulation - Regarding
Jason Swails
(Fri Mar 30 2012 - 15:51:50 PDT)
[AMBER] Issue with running sander
板垣哲彦
(Fri Mar 30 2012 - 05:37:21 PDT)
Re: [AMBER] Issue with running sander
Jason Swails
(Fri Mar 30 2012 - 07:13:14 PDT)
Re: [AMBER] Issue with running sander
David A Case
(Fri Mar 30 2012 - 09:39:47 PDT)
Re: [AMBER] Issue with running sander
Jason Swails
(Fri Mar 30 2012 - 10:56:15 PDT)
[AMBER] Query on error
abinayar.imsc.res.in
(Fri Mar 30 2012 - 05:39:19 PDT)
[AMBER] Query on error :Atom does not have a type
abinayar.imsc.res.in
(Fri Mar 30 2012 - 05:52:49 PDT)
Re: [AMBER] Query on error :Atom does not have a type
Jason Swails
(Fri Mar 30 2012 - 07:15:33 PDT)
[AMBER] Which methodology could estimate the binding affinity of zinc containing metalloprotei(wrong string) Cligand complex accurately?
JiYuan Liu
(Fri Mar 30 2012 - 08:00:35 PDT)
[AMBER] ptraj: SegFault during SOM clustering
Anselm Horn
(Fri Mar 30 2012 - 09:47:34 PDT)
[AMBER] test failure in the AMBERTOOL installation
Acoot Brett
(Sat Mar 31 2012 - 23:26:34 PDT)
Last message date
:
Sat Mar 31 2012 - 23:30:03 PDT
Archived on
: Mon Dec 23 2024 - 05:54:26 PST
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