The patch fixed the problem. I still have to specify "rna.amber94.rlb." That's not a problem.
Thanks for the help.
Mike
On Mar 13, 2012, at 3:28 AM, David A. Case wrote:
> On Mon, Mar 12, 2012, Michael F. Bruist wrote:
>
>> Unfortunately, this version gives the same error on my system. I had to
>> specify "rna.amber94.rlb" in the link_na command to get it to run since
>> it was defaulting to the DNA library. With that change, it now adds
>
> Aah, there was a fix in the developers' version that never became a bugfix.
> Try this:
>
> cd $AMBERHOME
> patch -p0 -R < /path/to/cgrad.patch
>
> where /path/to/cgrad.patch points to the attached file.
>
> ...dac
>
> <cgrad.patch><ATT00001..txt>
Dr. Michael F. Bruist
Associate Professor of Biochemistry
Department of Chemistry & Biochemistry
Griffith Hall 147
University of the Sciences in Philadelphia
Philadelphia, PA 19104-4495
Phone (Office & Voice Mail): (215) 596-8530
Department Phone: -8839
Department Fax: -8543
E-mail: m.bruist .usp.edu
web page: http://tonga.usp.edu/bruist
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Received on Fri Mar 16 2012 - 10:00:04 PDT
