Re: [AMBER] Residual Dipolar Coupling

From: case <case.biomaps.rutgers.edu>
Date: Wed, 7 Mar 2012 08:04:23 -0500

On Tue, Mar 06, 2012, Rahul Banerjee wrote:
>
> I want to generate restrain based on the RDC data from out NMR expt.
>
> The RST.dip looks like this:
> &align
> id(1)=25, jd(1)=26, dobs(1)= -6.20,
> id(2)=36, jd(2)=37, dobs(2)= -8.75,
> id(3)=55, jd(3)=56, dobs(3)= -20.60,
> id(4)=72, jd(4)=73, dobs(4)= -12.03,
> id(5)=91, jd(5)=92, dobs(5)= -13.13,
> &end
>
> How can I get the output with the limiting values (dobsu and dobsl)?

It looks like this change was never incorporated into the makeDIP_RST.protein
file. The easiest thing would be to just modify that perl script (e.g. at
lines 59 and 74) to output the observed values in a different format.

Thanks for pointing this out: we'll try to make updates for the next release.

...dac


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Received on Wed Mar 07 2012 - 05:30:03 PST
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