Re: [AMBER] Dihedral analysis

From: Niel Henriksen <>
Date: Thu, 8 Mar 2012 14:10:26 +0000

I use "R", a free statistics and graphics program.
The results are nice, but it was a bit of a challenge
to get it working. It requires a semi-complicated
installation and learning the R syntax. Let me
know if you are interested.

From: Ibrahim Moustafa []
Sent: Wednesday, March 07, 2012 11:05 AM
To: AMBER Mailing List
Subject: [AMBER] Dihedral analysis

Dear Amber users,

  I have done MD simulations of my protein of interest and performed
dihedral analysis of selected residues in PTRAJ.
Iım looking for a software/script that can prepare dial plots of the
dihedral angles produced from PTRAJ analysis.

  Any idea how to make such a plot?

  Thanks for your help.


Ibrahim M. Moustafa, Ph.D.
Biochemistry and Molecular Biology Dept.
201 Althouse Lab., University Park,
Pennsylvania State University
PA 16802
Tel. (814) 863-8703
Fax (814) 865-7927
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Received on Thu Mar 08 2012 - 06:30:03 PST
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