Re: [AMBER] slow : amber job

From: Cannon, John F. <>
Date: Thu, 1 Mar 2012 18:27:29 +0000

Dear Akshar,

You have provided practically no useful information about your simulation for diagnosis. How many atoms? What is the nonbonded cutoff, etc? What were the benchmarks on other simulations on your computer?

John Cannon
Genetics Program Chair and
Associate Professor of
Molecular Microbiology and Immunology
University of Missouri
1 Hospital Drive
Columbia, Missouri 65212

-----Original Message-----
From: akshar bhosale []
Sent: Thursday, March 01, 2012 11:44 AM
Subject: [AMBER] slow : amber job


my amber jobs are running very slow and has completed only 1 ns in 3 days. i am using amber 10. job is bigger.

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Received on Thu Mar 01 2012 - 10:30:04 PST
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