Re: [AMBER] Problems with tetrahedral Al in antechamber

From: case <case.biomaps.rutgers.edu>
Date: Mon, 19 Mar 2012 08:11:32 -0400

On Mon, Mar 19, 2012, Gonzalo Jimenez wrote:
>
> I am trying to calculate the RESP charges using the standard protocol
> with Antechamber in Amber 11 AT1.5. The molecule is an organometallic
> compound with two tetrahedral Al atoms.

Antechamber and gaff are designed for organic molecules, not for
organometallics. I think the acdoctor program (which is recommended if you
have problems with antechamber) will catch things like this, and even provide
suggestions.

....dac


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Mar 19 2012 - 05:30:03 PDT
Custom Search