[AMBER] AMBER force calculations

From: David Condon <dec986.gmail.com>
Date: Fri, 2 Mar 2012 09:25:10 -0500

Hello AMBER community,

I wish to do a very simple force calculation on small molecule with AMBER.

I want to print out the results in the following manner:

 Center Atomic Forces (Hartrees/Bohr)
> Number Number X Y Z
> -------------------------------------------------------------------
> 1 1 -0.013840472 0.006184192 -0.017449443
> 2 8 -0.001254021 0.002478109 0.015430637
> 3 6 0.012193124 -0.002253820 -0.001928590
> 4 1 0.000604761 -0.007533336 -0.004640358
> 5 1 0.003751142 0.000636577 -0.007111325
> 6 6 0.004728352 0.004732434 0.025251443
> 7 1 0.000904130 0.006715029 0.003339335
> 8 8 0.007736524 -0.011316799 -0.011050874
> 9 6 -0.004283540 -0.015736246 0.008412823
> 10 1 0.003474074 -0.001951822 -0.008669195
> 11 7 0.012319615 0.027536212 -0.005742801
> 12 6 -0.003189597 -0.007040811 0.001403318
> 13 1 -0.002240575 0.002373720 0.008319431
> 14 6 0.008355495 0.006783900 -0.003055669
> 15 1 0.001598312 -0.000591626 -0.001304996
> 16 6 -0.015077408 0.028104077 0.027507462
> 17 7 0.009398325 -0.028375870 -0.033423192
> 18 1 -0.003575222 -0.006089736 -0.003293851
> 19 1 0.000373009 -0.006591262 -0.004007055
> 20 7 0.012406423 0.004165366 -0.005989237
> 21 6 -0.020034781 -0.032436161 0.007580551
> 22 8 0.021997410 -0.018905942 -0.001355500
> 23 6 -0.010291212 0.024399684 0.002101796
> 24 1 -0.004747313 -0.004373461 0.001623225
> 25 6 -0.024300537 0.001167487 -0.008324266
> 26 1 -0.001727523 0.017539246 0.005831803
> 27 8 -0.001892817 0.025892146 0.016631928
> 28 8 0.004809960 -0.010051110 -0.004173842
> 29 1 0.001235967 -0.005074795 0.004080807
> 30 1 0.000568397 -0.000385381 -0.005994365
>

How can I get AMBER to print out results like this? By that I mean, how
can I write the input file so the results will be printed in the same
manner?

Thanks for your time!
-Dave
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Received on Fri Mar 02 2012 - 06:30:02 PST
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