python scripting is a good way to produce excellent graphs quickly. easy to
learn & v flexible.
On 8 March 2012 16:47, CHAMI F. <fatima.chami.durham.ac.uk> wrote:
> Hi Ibrahim,
>
> I use Grace for plotting and doing statistics ( histograms and so on)
>
> it is free and easy to install on a linux machine
>
> Fatima
>
>
> -----Original Message-----
> From: Ibrahim Moustafa [mailto:I.moustafa.psu.edu]
> Sent: Thu 08/03/2012 16:06
> To: AMBER Mailing List
> Subject: Re: [AMBER] Dihedral analysis
>
> Dear Niel,
>
> Thank you very much for your reply. I am really interested to try what you
> did. I'd appreciate if I can get the script you used.
>
> Many thanks for your help.
>
> Ibrahim
>
>
> On 3/8/12 9:10 AM, "Niel Henriksen" <niel.henriksen.utah.edu> wrote:
>
> > I use "R", a free statistics and graphics program.
> > The results are nice, but it was a bit of a challenge
> > to get it working. It requires a semi-complicated
> > installation and learning the R syntax. Let me
> > know if you are interested.
> >
> > --Niel
> > ________________________________________
> > From: Ibrahim Moustafa [I.moustafa.psu.edu]
> > Sent: Wednesday, March 07, 2012 11:05 AM
> > To: AMBER Mailing List
> > Subject: [AMBER] Dihedral analysis
> >
> > Dear Amber users,
> >
> > I have done MD simulations of my protein of interest and performed
> > dihedral analysis of selected residues in PTRAJ.
> > Iım looking for a software/script that can prepare dial plots of the
> > dihedral angles produced from PTRAJ analysis.
> >
> > Any idea how to make such a plot?
> >
> > Thanks for your help.
> >
> > Ibrahim
> >
> >
> > --
> >
> > Ibrahim M. Moustafa, Ph.D.
> > Biochemistry and Molecular Biology Dept.
> > 201 Althouse Lab., University Park,
> > Pennsylvania State University
> > PA 16802
> >
> > Tel. (814) 863-8703
> > Fax (814) 865-7927
> >
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> >
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> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
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Received on Tue Mar 13 2012 - 11:00:04 PDT
