Hi Ibrahim,
I use Grace for plotting and doing statistics ( histograms and so on)
it is free and easy to install on a linux machine
Fatima
-----Original Message-----
From: Ibrahim Moustafa [mailto:I.moustafa.psu.edu]
Sent: Thu 08/03/2012 16:06
To: AMBER Mailing List
Subject: Re: [AMBER] Dihedral analysis
Dear Niel,
Thank you very much for your reply. I am really interested to try what you
did. I'd appreciate if I can get the script you used.
Many thanks for your help.
Ibrahim
On 3/8/12 9:10 AM, "Niel Henriksen" <niel.henriksen.utah.edu> wrote:
> I use "R", a free statistics and graphics program.
> The results are nice, but it was a bit of a challenge
> to get it working. It requires a semi-complicated
> installation and learning the R syntax. Let me
> know if you are interested.
>
> --Niel
> ________________________________________
> From: Ibrahim Moustafa [I.moustafa.psu.edu]
> Sent: Wednesday, March 07, 2012 11:05 AM
> To: AMBER Mailing List
> Subject: [AMBER] Dihedral analysis
>
> Dear Amber users,
>
> I have done MD simulations of my protein of interest and performed
> dihedral analysis of selected residues in PTRAJ.
> Iım looking for a software/script that can prepare dial plots of the
> dihedral angles produced from PTRAJ analysis.
>
> Any idea how to make such a plot?
>
> Thanks for your help.
>
> Ibrahim
>
>
> --
>
> Ibrahim M. Moustafa, Ph.D.
> Biochemistry and Molecular Biology Dept.
> 201 Althouse Lab., University Park,
> Pennsylvania State University
> PA 16802
>
> Tel. (814) 863-8703
> Fax (814) 865-7927
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Mar 08 2012 - 09:00:02 PST
