Hi
I know this is little bit off topic question, but I thought someone might help me.
I am trying to run Amber10 parallel test example on my Beowulf cluster(Ubuntu 11.10, OpenMPI)
It is asking slave node's password for every example. I noticed this kind of behaviour for Ubuntu +NFS4
when I test example C++/C programs,but I found a workaround using NFS3 instead of NFS4(they don't ask for password).
But this time even I use NFS3 , the slave asks its password.Whole amber11 is owned by mpiuser.
Do test Makefile has some option for debugging or verbose?
The result of my test is:
mpiuser.node1:~/amber11/test$ sudo make test.parallel.MM < /dev/null
export TESTsander=/home/mpiuser/amber11/exe/sander.MPI; make test.sander.BASIC
make[1]: Entering directory `/home/mpiuser/amber11/test'
cd cytosine && ./Run.cytosine
mpiuser.node2's password:
diffing cytosine.out.save with cytosine.out
PASSED
==============================================================
cd nonper && ./Run.nonper
mpiuser.node2's password:
diffing mdout.nonper.save with mdout.nonper
PASSED
==============================================================
cd nonper && ./Run.nonper.belly
mpiuser.node2's password:
diffing mdout.belly.save with mdout.belly
PASSED
==============================================================
cd nonper && ./Run.nonper.belly.mask
mpiuser.node2's password:
diffing mdout.belly.mask.save with mdout.belly.mask
PASSED
==============================================================
cd nonper && ./Run.nonper.min
mpiuser.node2's password: mpirun: killing job...
--------------------------------------------------------------------------
mpirun noticed that the job aborted, but has no info as to the process
that caused that situation.
--------------------------------------------------------------------------
mpirun: clean termination accomplished
make[1]: *** [test.sander.BASIC] Interrupt
make: *** [test.sander.BASIC.MPI] Interrupt
mpiuser.node1:~/amber11/test$
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Received on Thu Mar 29 2012 - 23:30:03 PDT
