[AMBER] correct inconsistencies in [DR]NA_CI.lib

From: Thomas Gaillard <thomas.gaillard.polytechnique.edu>
Date: Tue, 6 Mar 2012 17:57:36 +0100

Hi,

The attached patch corrects what I believe could be (harmless)
inconsistencies in DNA_CI.lib and RNA_CI.lib:

- [DR][ACGTU]N residues are missing
- the "C5'" "CT" to "C5'" "CI" substitution is not applied in the atomspertinfo section
- sometimes the 131072 flag is changed to 131073

If I understand, the [DR]NA_CI.lib files should be obtained from the
following substitution:

sed 's/"C5'\''" "CT"/"C5'\''" "CI"/' all_nucleic94.lib

This is not true in the current git version.

Regards,

-- 
Thomas Gaillard
Maître de conférences
Laboratoire de Biochimie
Ecole Polytechnique
91128 Palaiseau cedex
tel: +33 1 69 33 48 62
fax: +33 1 69 33 49 09
thomas.gaillard.polytechnique.edu
http://bioc.polytechnique.fr/~gaillard



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Received on Tue Mar 06 2012 - 09:00:02 PST
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