Amber Archive Nov 2014: by author

Abdul wadood
- Re: [AMBER] error in mmpbsa calculation (Fri Nov 14 2014 - 08:37:42 PST)
- [AMBER] error in mmpbsa calculation (Thu Nov 13 2014 - 08:30:40 PST)
Abhishek TYAGI
- [AMBER] CHAMBER error (Mon Nov 24 2014 - 20:37:46 PST)
- Re: [AMBER] AMBER Digest, Vol 1044, Issue 1 (Sun Nov 23 2014 - 22:08:48 PST)
- [AMBER] Error in CHAMBER output (Wed Nov 19 2014 - 22:18:25 PST)
- [AMBER] ERROR atom with mass 1 has type alreadydesignated as non-hydrogen type (Wed Nov 19 2014 - 19:01:08 PST)
Adrian Roitberg
- Re: [AMBER] Strange behavior AMBER12 (Mon Nov 03 2014 - 07:55:22 PST)
Aixiao Li
- Re: [AMBER] QM/MM adaptive biased MD_ABMD (Fri Nov 28 2014 - 12:32:36 PST)
- [AMBER] QM/MM adaptive biased MD_ABMD (Fri Nov 28 2014 - 08:36:12 PST)
- [AMBER] adQM/MM vlimit exceeded problem (Thu Nov 20 2014 - 02:32:49 PST)
Akihiro Yamane
- Re: [AMBER] How to restrain atoms (Fri Nov 28 2014 - 04:57:26 PST)
- [AMBER] How to restrain atoms (Tue Nov 25 2014 - 22:03:13 PST)
Aldo Segura
- Re: [AMBER] aMD on Amber 12 (Tue Nov 18 2014 - 08:49:14 PST)
- [AMBER] aMD on Amber 12 (Mon Nov 17 2014 - 21:53:21 PST)
Amihai
- Re: [AMBER] ERROR DURING "TESTING" OF AMBER INSTALLATION (Wed Nov 19 2014 - 04:21:25 PST)
- [AMBER] tleap not found in parallel amber14 (Tue Nov 18 2014 - 06:12:45 PST)
andrea spitaleri
- Re: [AMBER] cpptraj hist 3D (Thu Nov 06 2014 - 11:54:52 PST)
- Re: [AMBER] cpptraj hist 3D (Thu Nov 06 2014 - 10:39:55 PST)
- Re: [AMBER] cpptraj hist 3D (Thu Nov 06 2014 - 06:38:23 PST)
Andreas Goetz
- Re: [AMBER] adQM/MM vlimit exceeded problem (Mon Nov 24 2014 - 13:44:25 PST)
- Re: [AMBER] errors in qm/mm (Sun Nov 23 2014 - 22:27:33 PST)
- Re: [AMBER] adQM/MM vlimit exceeded problem (Sun Nov 23 2014 - 21:30:49 PST)
anu chandra
- Re: [AMBER] Free energy landscape (Thu Nov 27 2014 - 03:44:44 PST)
- [AMBER] Free energy landscape (Wed Nov 26 2014 - 03:07:19 PST)
Aron Broom
- Re: [AMBER] Implicit simulation and MMPBSA/GBSA caculations (Sun Nov 09 2014 - 11:53:58 PST)
- Re: [AMBER] Binding energy using mm_pbsa.pl (Thu Nov 06 2014 - 13:50:38 PST)
- Re: [AMBER] Binding energy using mm_pbsa.pl (Thu Nov 06 2014 - 12:14:04 PST)
- Re: [AMBER] Binding energy using mm_pbsa.pl (Thu Nov 06 2014 - 11:51:30 PST)
Asaminew Haile
- Re: [AMBER] xLEaP Na+ Cl- (Thu Nov 27 2014 - 04:05:42 PST)
asdda asa
- [AMBER] Monitoring pi-cationic interaction (Fri Nov 28 2014 - 23:12:14 PST)
Asmita Gupta
- [AMBER] nativecontacts in ambertools14 (Tue Nov 11 2014 - 09:03:31 PST)
ATUL KUMAR
- Re: [AMBER] Representing Sphere and Its parameterization in Amber. (Thu Nov 13 2014 - 04:21:35 PST)
- Re: [AMBER] Representing Sphere and Its parameterization in Amber. (Tue Nov 11 2014 - 22:30:38 PST)
- [AMBER] Representing Sphere and Its parameterization in Amber. (Mon Nov 10 2014 - 22:42:50 PST)
Ayesha Fatima
- Re: [AMBER] errors in qm/mm (Mon Nov 24 2014 - 05:56:29 PST)
- Re: [AMBER] errors in qm/mm (Mon Nov 24 2014 - 05:27:50 PST)
- Re: [AMBER] errors in qm/mm (Mon Nov 24 2014 - 01:22:47 PST)
- Re: [AMBER] errors in qm/mm (Sun Nov 23 2014 - 23:02:47 PST)
- Re: [AMBER] errors in qm/mm (Sun Nov 23 2014 - 22:39:49 PST)
- [AMBER] errors in qm/mm (Sun Nov 23 2014 - 22:10:57 PST)
- Re: [AMBER] help in MD (Thu Nov 13 2014 - 03:09:10 PST)
Baifan Wang
- Re: [AMBER] Forcefield for DNA (Tue Nov 25 2014 - 04:29:09 PST)
- [AMBER] Forcefield for DNA (Mon Nov 24 2014 - 06:55:15 PST)
Bajarang Kumbhar
- Re: [AMBER] Implicit simulation and MMPBSA/GBSA caculations (Sat Nov 08 2014 - 22:26:51 PST)
BATUHAN KAV
- [AMBER] Constant pH MD with CUDA not working (Mon Nov 10 2014 - 12:05:55 PST)
bharat lakhani
- [AMBER] Calcium parameters in calmodulin (Thu Nov 13 2014 - 08:16:59 PST)
Biao Ma
- Re: [AMBER] The error when install amber12+AmberTools13 on Ubuntucd (Mon Nov 24 2014 - 18:26:25 PST)
- [AMBER] The error when install amber12+AmberTools13 on Ubuntucd (Thu Nov 20 2014 - 18:31:18 PST)
Bob Healey
- [AMBER] Errors compiling Amber 14 after applying update 7 (Thu Nov 20 2014 - 09:45:08 PST)
Brittany Boykin
- [AMBER] AMBER Unique atom types (Sat Nov 22 2014 - 14:45:39 PST)
Caitlin Scott
- [AMBER] Calcium vdW parameters (Fri Nov 28 2014 - 16:14:40 PST)
Carlos Romero
- Re: [AMBER] minimization question (Fri Nov 28 2014 - 07:38:53 PST)
- [AMBER] minimization question (Fri Nov 28 2014 - 07:03:37 PST)
Carlos Simmerling
- Re: [AMBER] 100ps long minimization script (Sun Nov 30 2014 - 05:53:13 PST)
- Re: [AMBER] Free energy landscape (Wed Nov 26 2014 - 09:12:53 PST)
- Re: [AMBER] Questions regarding GB simulations in Amber14 - ff14SBonlysc vs ff14SB - igb1 vs igb8 - hydrphobic force (Fri Nov 21 2014 - 18:35:02 PST)
- Re: [AMBER] The question about REMD exchange ratio (Thu Nov 13 2014 - 03:35:05 PST)
- Re: [AMBER] H-REMD (Wed Nov 05 2014 - 08:52:48 PST)
CHAMI F.
- Re: [AMBER] AM1-BCC dipole moment (Mon Nov 10 2014 - 07:10:10 PST)
- Re: [AMBER] AM1-BCC dipole moment (Mon Nov 10 2014 - 05:51:33 PST)
- [AMBER] cpptraj hist 3D (Thu Nov 06 2014 - 04:54:58 PST)
- [AMBER] AM1-BCC dipole moment (Wed Nov 05 2014 - 04:20:04 PST)
Chris Moth
- [AMBER] nmr restraints and periodic boundary conditions (Tue Nov 18 2014 - 14:20:06 PST)
Christina Bergonzo
- Re: [AMBER] writing out restart files in netcdf format (Fri Nov 07 2014 - 08:39:24 PST)
- Re: [AMBER] writing out restart files in netcdf format (Fri Nov 07 2014 - 08:30:36 PST)
Daniel Roe
- Re: [AMBER] Monitoring pi-cationic interaction (Sun Nov 30 2014 - 11:01:11 PST)
- Re: [AMBER] hydophobicity (Sun Nov 30 2014 - 10:42:13 PST)
- Re: [AMBER] Correct script for B-factor (Sun Nov 30 2014 - 10:33:05 PST)
- Re: [AMBER] AmberTools13 (Wed Nov 26 2014 - 09:54:27 PST)
- Re: [AMBER] Different PCA results when loading trajectories in a different order (Wed Nov 26 2014 - 09:52:04 PST)
- Re: [AMBER] Free energy landscape (Wed Nov 26 2014 - 09:01:33 PST)
- Re: [AMBER] Different PCA results when loading trajectories in a different order (Wed Nov 26 2014 - 07:36:50 PST)
- Re: [AMBER] Different PCA results when loading trajectories in a different order (Tue Nov 25 2014 - 10:08:33 PST)
- Re: [AMBER] Different PCA results when loading trajectories in a different order (Tue Nov 25 2014 - 10:03:42 PST)
- Re: [AMBER] How to seperate a protein-protein complex in PRMTOP and INPCRD files? (Mon Nov 24 2014 - 07:26:46 PST)
- Re: [AMBER] Pairwise vs Sander with imin=5 (Thu Nov 20 2014 - 10:01:58 PST)
- Re: [AMBER] Pairwise vs Sander with imin=5 (Wed Nov 19 2014 - 21:14:27 PST)
- Re: [AMBER] box size changing during equilibration (Wed Nov 19 2014 - 07:26:45 PST)
- Re: [AMBER] aMD on Amber 12 (Tue Nov 18 2014 - 09:47:25 PST)
- Re: [AMBER] aMD on Amber 12 (Tue Nov 18 2014 - 07:01:20 PST)
- Re: [AMBER] Regarding pairdist function in cpptraj (Mon Nov 17 2014 - 07:17:31 PST)
- Re: [AMBER] time correlation function (Thu Nov 13 2014 - 07:09:54 PST)
- Re: [AMBER] time correlation function (Wed Nov 12 2014 - 10:37:44 PST)
- Re: [AMBER] options "-ext" and "-pqr" of ambpdb are exlusive (Wed Nov 12 2014 - 07:27:02 PST)
- Re: [AMBER] cpptraj (Tue Nov 11 2014 - 12:04:38 PST)
- Re: [AMBER] nativecontacts in ambertools14 (Tue Nov 11 2014 - 11:55:40 PST)
- Re: [AMBER] cpptraj (Tue Nov 11 2014 - 11:46:03 PST)
- Re: [AMBER] problem reimaging after strip WAT (Tue Nov 11 2014 - 08:05:15 PST)
- Re: [AMBER] cpptraj hist 3D (Thu Nov 06 2014 - 09:35:46 PST)
- Re: [AMBER] Imaging (Mon Nov 03 2014 - 10:45:09 PST)
David A Case
- Re: [AMBER] Problem with triangular point in parameter file (Sun Nov 30 2014 - 12:43:36 PST)
- Re: [AMBER] 100ps long minimization script (Sun Nov 30 2014 - 12:38:21 PST)
- Re: [AMBER] QM/MM adaptive biased MD_ABMD (Fri Nov 28 2014 - 09:28:25 PST)
- Re: [AMBER] Correct script for B-factor (Fri Nov 28 2014 - 09:22:10 PST)
- Re: [AMBER] minimization question (Fri Nov 28 2014 - 07:32:41 PST)
- Re: [AMBER] AmberTools13 (Wed Nov 26 2014 - 10:31:59 PST)
- Re: [AMBER] How to restrain atoms (Wed Nov 26 2014 - 05:11:30 PST)
- Re: [AMBER] AMBER Unique atom types (Sat Nov 22 2014 - 18:28:26 PST)
- Re: [AMBER] Installation error: recipe for target 'pupildata.o' failed (Sat Nov 22 2014 - 18:09:49 PST)
- Re: [AMBER] AMBER error: peek_ewald_inpcrd: SHOULD NOT BE HERE (Sat Nov 22 2014 - 11:35:45 PST)
- Re: [AMBER] AMBER Digest, Vol 1045, Issue 1 (Sat Nov 22 2014 - 04:39:51 PST)
- Re: [AMBER] amber error about protein containing heme (Sat Nov 22 2014 - 04:35:03 PST)
- Re: [AMBER] about nab (Fri Nov 21 2014 - 04:36:23 PST)
- Re: [AMBER] cyclic peptide side chains (Fri Nov 21 2014 - 04:29:02 PST)
- Re: [AMBER] cut value in minimisation (Fri Nov 21 2014 - 04:26:26 PST)
- Re: [AMBER] PBSA error (Thu Nov 20 2014 - 12:42:25 PST)
- Re: [AMBER] Errors compiling Amber 14 after applying update 7 (Thu Nov 20 2014 - 12:33:32 PST)
- Re: [AMBER] PBSA error (Thu Nov 20 2014 - 12:32:45 PST)
- [AMBER] Problems with AmberTools test suite (Thu Nov 20 2014 - 08:15:31 PST)
- Re: [AMBER] ERROR DURING "TESTING" OF AMBER INSTALLATION (Wed Nov 19 2014 - 04:08:00 PST)
- Re: [AMBER] nmr restraints and periodic boundary conditions (Tue Nov 18 2014 - 17:50:37 PST)
- Re: [AMBER] amber error about protein containing heme (Tue Nov 18 2014 - 04:38:56 PST)
- Re: [AMBER] ERROR DURING "TESTING" OF AMBER INSTALLATION (Tue Nov 18 2014 - 04:34:10 PST)
- Re: [AMBER] Failure of antechamber with c -1 m 2 (Mon Nov 17 2014 - 08:01:25 PST)
- Re: [AMBER] Failure of antechamber with c -1 m 2 (Sun Nov 16 2014 - 13:20:04 PST)
- Re: [AMBER] heme amber parameter (Sat Nov 15 2014 - 17:58:46 PST)
- Re: [AMBER] Is there a tool to calculate electron density maps averaged over a trajectory? (Fri Nov 14 2014 - 18:31:54 PST)
- Re: [AMBER] options "-ext" and "-pqr" of ambpdb are exlusive (Fri Nov 14 2014 - 05:19:36 PST)
- Re: [AMBER] minimization problem (Fri Nov 14 2014 - 04:59:56 PST)
- Re: [AMBER] Amber 14 installation problems (Fri Nov 14 2014 - 04:55:33 PST)
- Re: [AMBER] help (Thu Nov 13 2014 - 03:57:42 PST)
- Re: [AMBER] a problem on heating the system (Wed Nov 12 2014 - 04:15:11 PST)
- Re: [AMBER] Issue with DFTB-MD trajectory (Tue Nov 11 2014 - 03:56:44 PST)
- Re: [AMBER] a problem on heating the system (Tue Nov 11 2014 - 03:54:32 PST)
- Re: [AMBER] Representing Sphere and Its parameterization in Amber. (Tue Nov 11 2014 - 03:47:48 PST)
- Re: [AMBER] small molecules (Mon Nov 10 2014 - 14:11:34 PST)
- Re: [AMBER] a problem on heating the system (Mon Nov 10 2014 - 06:01:54 PST)
- Re: [AMBER] Problems of pdb file convertion by pdb4amber and mmtsb (Mon Nov 10 2014 - 04:12:02 PST)
- Re: [AMBER] Which force field is "the best" (Sun Nov 09 2014 - 14:29:46 PST)
- Re: [AMBER] bond distances in amber (Sat Nov 08 2014 - 17:10:50 PST)
- Re: [AMBER] Help needed regarding Ligand Protein MD studies (Sat Nov 08 2014 - 07:14:42 PST)
- Re: [AMBER] Problems on PRMTOP file generation under ff02pol.r1 (Fri Nov 07 2014 - 05:53:09 PST)
- Re: [AMBER] AM1-BCC dipole moment (Wed Nov 05 2014 - 07:10:11 PST)
- Re: [AMBER] AMBER Question: Setting box angle in tleap (Wed Nov 05 2014 - 04:00:44 PST)
DEBOSTUTI GHOSHDASTIDAR
- Re: [AMBER] Regarding pairdist function in cpptraj (Mon Nov 17 2014 - 21:56:15 PST)
- [AMBER] Regarding pairdist function in cpptraj (Mon Nov 17 2014 - 06:49:06 PST)
Elham tazikeh
- [AMBER] Fw: (Thu Nov 27 2014 - 00:57:29 PST)
Emilio Angelina
- Re: [AMBER] minimization problem (Fri Nov 14 2014 - 06:49:18 PST)
- [AMBER] minimization problem (Thu Nov 13 2014 - 12:52:28 PST)
Fabian Glaser
- Re: [AMBER] restart file position (Sun Nov 02 2014 - 05:57:19 PST)
Fatemeh Sadat Alavi
- Re: [AMBER] amber error about protein containing heme (Sat Nov 22 2014 - 00:04:33 PST)
- [AMBER] amber error about protein containing heme (Tue Nov 18 2014 - 02:37:16 PST)
- [AMBER] amber error about protein containing heme (Tue Nov 18 2014 - 02:31:57 PST)
- [AMBER] heme amber parameter (Sat Nov 15 2014 - 07:56:27 PST)
Fernando Ezequiel Chain
- [AMBER] Amber 14 and NetCDF installation issue (Thu Nov 27 2014 - 01:14:37 PST)
Francesco Pietra
- Re: [AMBER] Failure of antechamber with c -1 m 2 (Mon Nov 17 2014 - 08:55:07 PST)
- Re: [AMBER] Failure of antechamber with c -1 m 2 (Sun Nov 16 2014 - 13:57:15 PST)
- [AMBER] Failure of antechamber with c -1 m 2 (Sun Nov 16 2014 - 09:35:45 PST)
FyD
- Re: [AMBER] AMBER Unique atom types (Sat Nov 22 2014 - 23:45:25 PST)
- [AMBER] Fwd: Re: [q4md-fft] FAD wrong geometry in F-90 project (Sat Nov 01 2014 - 22:39:35 PDT)
- Re: [AMBER] [q4md-fft] FAD wrong geometry in F-90 project (Sat Nov 01 2014 - 13:50:17 PDT)
Garrido Ruiz, Diego
- [AMBER] Running explicit solvent CpHMD on GPUs (Wed Nov 12 2014 - 11:40:52 PST)
Genin, Nicolas J
- Re: [AMBER] [Amber] Amber14 does not find parameters for Mg2+, please help (Wed Nov 12 2014 - 11:29:09 PST)
- [AMBER] [Amber] Amber14 does not find parameters for Mg2+, please help (Wed Nov 12 2014 - 07:35:49 PST)
geyushu.ustc.edu.cn
- [AMBER] Counseling about the GPU series supporting PMEMD (Sun Nov 23 2014 - 23:06:03 PST)
giulia palermo
- Re: [AMBER] time correlation function (Thu Nov 13 2014 - 03:44:52 PST)
- [AMBER] time correlation function (Wed Nov 12 2014 - 10:04:00 PST)
Gonzalo Jimenez
- Re: [AMBER] Which force field is "the best" (Mon Nov 10 2014 - 04:20:55 PST)
- [AMBER] Which force field is "the best" (Sun Nov 09 2014 - 11:10:41 PST)
Guillaume Roellinger
- Re: [AMBER] Different PCA results when loading trajectories in a different order (Wed Nov 26 2014 - 01:58:43 PST)
- [AMBER] Different PCA results when loading trajectories in a different order (Tue Nov 25 2014 - 09:49:05 PST)
Gulsevin,Alican
- Re: [AMBER] Help needed regarding Ligand Protein MD studies (Fri Nov 07 2014 - 06:38:48 PST)
Gustavo Seabra
- Re: [AMBER] errors in qm/mm (Mon Nov 24 2014 - 05:53:42 PST)
- Re: [AMBER] errors in qm/mm (Mon Nov 24 2014 - 04:43:18 PST)
Hadeer ELHabashy
- [AMBER] AMBER error: peek_ewald_inpcrd: SHOULD NOT BE HERE (Sat Nov 22 2014 - 07:43:24 PST)
Hannes Loeffler
- Re: [AMBER] Thermodynamic integration: Delta G of less soft core atoms is different from the one with more soft core atoms (Mon Nov 24 2014 - 08:21:51 PST)
- Re: [AMBER] AM1-BCC dipole moment (Mon Nov 10 2014 - 07:59:09 PST)
- [AMBER] bug in pmemd softcore TI with SHAKE (Tue Nov 04 2014 - 02:07:39 PST)
hannes.loeffler.stfc.ac.uk
- Re: [AMBER] pmemd.MPI thermodynamic integration (TI) relative binding free energy set up (Sat Nov 15 2014 - 00:40:15 PST)
HERBERT MAX VENTHUR PE¥A
- [AMBER] Fwd: InputError when running MMBPSA.py (Fri Nov 21 2014 - 19:28:58 PST)
- [AMBER] InputError when running MMBPSA.py (Tue Nov 18 2014 - 18:16:54 PST)
Him Shweta
- [AMBER] Calculating Normalised electron density for DOPC. (Sat Nov 01 2014 - 06:10:58 PDT)
IBRAHIM M ABDELRADY
- Re: [AMBER] Strange behavior AMBER12 (Mon Nov 03 2014 - 08:15:12 PST)
- Re: [AMBER] Strange behavior AMBER12 (Mon Nov 03 2014 - 07:57:51 PST)
- [AMBER] Strange behavior AMBER12 (Mon Nov 03 2014 - 07:52:59 PST)
Ibrahim Said
- Re: [AMBER] AmberTools13 (Thu Nov 27 2014 - 02:01:57 PST)
- [AMBER] AmberTools13 (Wed Nov 26 2014 - 09:32:44 PST)
Iqbal, Muhammad Sajid
- [AMBER] determine free available space in simulation box (Thu Nov 06 2014 - 11:04:12 PST)
Izvyekov, Sergiy (Sergey) CIV USARMY ARL (US)
- [AMBER] Postdoctoral Position at the U.S. Army Research Laboratory in Coarse-Grain Modeling and Simulation (Fri Nov 14 2014 - 13:11:51 PST)
James Maier
- Re: [AMBER] 4x GTX 980 (Sun Nov 16 2014 - 20:16:18 PST)
- Re: [AMBER] 4x GTX 980 (Sun Nov 16 2014 - 20:13:24 PST)
James Starlight
- [AMBER] Error logs (Tue Nov 04 2014 - 00:24:15 PST)
Jason Swails
- Re: [AMBER] PARALLEL INSTALLATION ERROR (Sun Nov 30 2014 - 04:46:59 PST)
- Re: [AMBER] doubt in RMD (Fri Nov 28 2014 - 19:17:02 PST)
- Re: [AMBER] Interaction energy between two dimer unit (Fri Nov 28 2014 - 16:03:44 PST)
- Re: [AMBER] generate topology file and parameter file for complex with dummy atoms (Fri Nov 28 2014 - 15:53:21 PST)
- Re: [AMBER] installing amber12 in GPU (Fri Nov 28 2014 - 15:31:46 PST)
- Re: [AMBER] AmberTools13 (Thu Nov 27 2014 - 03:58:55 PST)
- Re: [AMBER] Amber 14 and NetCDF installation issue (Thu Nov 27 2014 - 03:55:11 PST)
- Re: [AMBER] (no subject) (Thu Nov 27 2014 - 03:49:52 PST)
- Re: [AMBER] doubt in RMD (Thu Nov 27 2014 - 03:48:15 PST)
- Re: [AMBER] hydophobicity (Thu Nov 27 2014 - 03:34:51 PST)
- Re: [AMBER] CHAMBER error (Wed Nov 26 2014 - 18:56:39 PST)
- Re: [AMBER] hydophobicity (Wed Nov 26 2014 - 15:28:04 PST)
- Re: [AMBER] doubt in RMD (Wed Nov 26 2014 - 14:58:27 PST)
- Re: [AMBER] AmberTools13 (Wed Nov 26 2014 - 10:28:26 PST)
- Re: [AMBER] Glycan bond error leap (Mon Nov 24 2014 - 08:20:03 PST)
- Re: [AMBER] AMBER Digest, Vol 1044, Issue 1 (Mon Nov 24 2014 - 02:44:31 PST)
- Re: [AMBER] How to seperate a protein-protein complex in PRMTOP and INPCRD files? (Sun Nov 23 2014 - 17:42:54 PST)
- Re: [AMBER] Installation error: recipe for target 'pupildata.o' failed (Sun Nov 23 2014 - 17:36:22 PST)
- Re: [AMBER] Installation error: recipe for target 'pupildata.o' failed (Sun Nov 23 2014 - 09:55:57 PST)
- Re: [AMBER] Installation error: recipe for target 'pupildata.o' failed (Sat Nov 22 2014 - 20:58:01 PST)
- Re: [AMBER] Fwd: InputError when running MMBPSA.py (Fri Nov 21 2014 - 21:49:30 PST)
- Re: [AMBER] Bug Report (Fri Nov 21 2014 - 02:30:30 PST)
- Re: [AMBER] cut value in minimisation (Fri Nov 21 2014 - 02:18:44 PST)
- Re: [AMBER] The error when install amber12+AmberTools13 on Ubuntucd (Thu Nov 20 2014 - 19:06:29 PST)
- Re: [AMBER] MMPBSA.py bug with amber mask for stability/QH calculations (Thu Nov 20 2014 - 15:47:42 PST)
- Re: [AMBER] PBSA error (Thu Nov 20 2014 - 12:21:23 PST)
- Re: [AMBER] Errors compiling Amber 14 after applying update 7 (Thu Nov 20 2014 - 12:17:51 PST)
- Re: [AMBER] InputError when running MMBPSA.py (Tue Nov 18 2014 - 22:52:46 PST)
- Re: [AMBER] Is it possible to extract atomic charge information from the trajectory? (Tue Nov 18 2014 - 22:47:21 PST)
- Re: [AMBER] nmr restraints and periodic boundary conditions (Tue Nov 18 2014 - 14:57:54 PST)
- Re: [AMBER] AMBER Digest, Vol 1041, Issue 1 (Tue Nov 18 2014 - 08:32:04 PST)
- Re: [AMBER] amber error about protein containing heme (Tue Nov 18 2014 - 06:56:15 PST)
- Re: [AMBER] tleap not found in parallel amber14 (Tue Nov 18 2014 - 06:53:47 PST)
- Re: [AMBER] citation for mdout_analyser.py (Tue Nov 18 2014 - 06:49:03 PST)
- Re: [AMBER] MMPBSA.py normal mode analysis (Mon Nov 17 2014 - 12:08:39 PST)
- Re: [AMBER] help (Mon Nov 17 2014 - 10:48:24 PST)
- Re: [AMBER] MMPBSA.py nmode (Mon Nov 17 2014 - 06:02:28 PST)
- Re: [AMBER] MMPBSA warning : No skew or curtosis when zero variance in moment (Mon Nov 17 2014 - 05:57:32 PST)
- Re: [AMBER] Prmtop (Sat Nov 15 2014 - 09:51:34 PST)
- Re: [AMBER] Entropy using Nmode (Fri Nov 14 2014 - 20:14:46 PST)
- Re: [AMBER] error in mmpbsa calculation (Thu Nov 13 2014 - 09:02:51 PST)
- Re: [AMBER] Calcium parameters in calmodulin (Thu Nov 13 2014 - 08:58:19 PST)
- Re: [AMBER] Transition state (Thu Nov 13 2014 - 05:24:30 PST)
- Re: [AMBER] The question about REMD exchange ratio (Thu Nov 13 2014 - 05:17:18 PST)
- Re: [AMBER] [Amber] Amber14 does not find parameters for Mg2+, please help (Wed Nov 12 2014 - 08:34:58 PST)
- Re: [AMBER] a problem on heating the system (Wed Nov 12 2014 - 04:34:10 PST)
- Re: [AMBER] problem reimaging after strip WAT (Tue Nov 11 2014 - 07:28:09 PST)
- Re: [AMBER] AM1-BCC dipole moment (Mon Nov 10 2014 - 06:01:52 PST)
- Re: [AMBER] a problem on heating the system (Mon Nov 10 2014 - 05:30:06 PST)
- Re: [AMBER] Problems of pdb file convertion by pdb4amber and mmtsb (Mon Nov 10 2014 - 04:42:29 PST)
- Re: [AMBER] MMPBSA.py (Sun Nov 09 2014 - 14:49:26 PST)
- Re: [AMBER] Implicit simulation and MMPBSA/GBSA caculations (Sun Nov 09 2014 - 06:10:58 PST)
- Re: [AMBER] HEAT and PROD files for 10 ns run (Sat Nov 08 2014 - 09:11:34 PST)
- Re: [AMBER] Help needed regarding Ligand Protein MD studies (Fri Nov 07 2014 - 06:12:48 PST)
- Re: [AMBER] hbonds (Fri Nov 07 2014 - 05:02:11 PST)
- Re: [AMBER] bond distances in amber (Fri Nov 07 2014 - 04:55:38 PST)
- Re: [AMBER] DRUG_PROTEIN INTERACTIOM (Fri Nov 07 2014 - 04:31:14 PST)
- Re: [AMBER] Binding energy using mm_pbsa.pl (Thu Nov 06 2014 - 13:55:10 PST)
- Re: [AMBER] Binding energy using mm_pbsa.pl (Thu Nov 06 2014 - 12:34:39 PST)
- Re: [AMBER] Binding energy using mm_pbsa.pl (Thu Nov 06 2014 - 12:18:46 PST)
- Re: [AMBER] cpptraj hist 3D (Thu Nov 06 2014 - 11:36:39 PST)
- Re: [AMBER] cpptraj hist 3D (Thu Nov 06 2014 - 06:29:21 PST)
- Re: [AMBER] problem using pmemd.cuda with barostat=2 option (Wed Nov 05 2014 - 10:47:20 PST)
- Re: [AMBER] H-REMD (Wed Nov 05 2014 - 09:05:07 PST)
- Re: [AMBER] AM1-BCC dipole moment (Wed Nov 05 2014 - 07:21:05 PST)
- Re: [AMBER] aMD error (Tue Nov 04 2014 - 04:35:55 PST)
- Re: [AMBER] error message of addLJType of parmed: Action addLJType failed. UnhandledArgumentWarning: 0.0 0.0 (Tue Nov 04 2014 - 04:33:54 PST)
- Re: [AMBER] error message of addLJType of parmed: Action addLJType failed. UnhandledArgumentWarning: 0.0 0.0 (Mon Nov 03 2014 - 09:09:25 PST)
- Re: [AMBER] Strange behavior AMBER12 (Mon Nov 03 2014 - 07:56:40 PST)
- Re: [AMBER] NVT and NPT ensemble (Mon Nov 03 2014 - 06:23:17 PST)
- Re: [AMBER] The question about REMD exchange ratio (Mon Nov 03 2014 - 06:03:25 PST)
- Re: [AMBER] NVT and NPT ensemble (Mon Nov 03 2014 - 04:53:42 PST)
- Re: [AMBER] Fully random MPI error after updating CentOS from release 6.5 to 6.6 (Mon Nov 03 2014 - 04:36:57 PST)
- Re: [AMBER] restart file position (Sun Nov 02 2014 - 06:15:49 PST)
- Re: [AMBER] Problem regarding Chamber and psf file (Sat Nov 01 2014 - 15:35:39 PDT)
joan.montesdeoca.uns.edu.ar
- [AMBER] single dimension PMF calculation (Mon Nov 03 2014 - 16:32:59 PST)
John Smith
- [AMBER] Transition state (Mon Nov 10 2014 - 10:13:36 PST)
Jonathan Gough
- [AMBER] Issues with Cholesterol lipid11, lipid14 and lipid14_supp.lib (Fri Nov 21 2014 - 10:15:02 PST)
- [AMBER] Can you use cholesterol lipid 11 parameters and lipid 14 lipid parameters? (Thu Nov 20 2014 - 12:06:19 PST)
Jordi Bujons
- [AMBER] GTX 780 Ti & GTX 980 (Wed Nov 26 2014 - 09:35:06 PST)
Jorgen Simonsen
- Re: [AMBER] Problem with triangular point in parameter file (Sun Nov 30 2014 - 14:53:42 PST)
- [AMBER] Problem with triangular point in parameter file (Sun Nov 30 2014 - 09:52:56 PST)
- Re: [AMBER] generate topology file and parameter file for complex with dummy atoms (Sat Nov 29 2014 - 16:08:00 PST)
- [AMBER] generate topology file and parameter file for complex with dummy atoms (Fri Nov 28 2014 - 15:45:21 PST)
Jose Borreguero
- Re: [AMBER] Is there a tool to calculate electron density maps averaged over a trajectory? (Sat Nov 15 2014 - 06:58:23 PST)
- [AMBER] Is there a tool to calculate electron density maps averaged over a trajectory? (Fri Nov 14 2014 - 15:16:10 PST)
Ken Merz
- Re: [AMBER] Metal parameterization (Sat Nov 29 2014 - 05:11:56 PST)
- Re: [AMBER] Calcium vdW parameters (Sat Nov 29 2014 - 05:07:38 PST)
Krisztina Feher
- [AMBER] citation for mdout_analyser.py (Tue Nov 18 2014 - 05:14:33 PST)
Kshatresh Dutta Dubey
- Re: [AMBER] PBSA error (Thu Nov 20 2014 - 12:52:22 PST)
- Re: [AMBER] PBSA error (Thu Nov 20 2014 - 12:45:49 PST)
- [AMBER] PBSA error (Thu Nov 20 2014 - 10:10:08 PST)
kurisaki
- Re: [AMBER] Pairwise vs Sander with imin=5 (Wed Nov 19 2014 - 22:02:00 PST)
- [AMBER] Pairwise vs Sander with imin=5 (Wed Nov 19 2014 - 18:01:08 PST)
Lachele Foley
- Re: [AMBER] Glycan bond error leap (Mon Nov 24 2014 - 10:18:56 PST)
Lara rajam
- [AMBER] small molecules (Mon Nov 10 2014 - 12:46:02 PST)
Lawrenz, Morgan
- [AMBER] MMPBSA.py bug with amber mask for stability/QH calculations (Thu Nov 20 2014 - 15:34:06 PST)
LI An-Bang
- [AMBER] How to seperate a protein-protein complex in PRMTOP and INPCRD files? (Sun Nov 23 2014 - 16:27:56 PST)
- Re: [AMBER] options "-ext" and "-pqr" of ambpdb are exlusive (Sun Nov 16 2014 - 16:21:34 PST)
- [AMBER] options "-ext" and "-pqr" of ambpdb are exlusive (Tue Nov 11 2014 - 19:48:52 PST)
- [AMBER] Problems of pdb file convertion by pdb4amber and mmtsb (Sun Nov 09 2014 - 18:31:43 PST)
Liu, Hui
- [AMBER] Bug Report (Thu Nov 20 2014 - 23:38:52 PST)
M. Reza Ganjalikhany
- Re: [AMBER] GPU enabled Hardware specification (Mon Nov 17 2014 - 12:28:15 PST)
- Re: [AMBER] GPU enabled Hardware specification (Mon Nov 17 2014 - 01:17:18 PST)
- Re: [AMBER] GPU enabled Hardware specification (Sat Nov 15 2014 - 23:49:46 PST)
- Re: [AMBER] GPU enabled Hardware specification (Sat Nov 15 2014 - 02:41:01 PST)
m13654940810
- [AMBER] about nab (Fri Nov 21 2014 - 03:12:07 PST)
Mahmood Jasim
- [AMBER] Transition state (Thu Nov 13 2014 - 01:43:51 PST)
Marc van der Kamp
- Re: [AMBER] errors in qm/mm (Mon Nov 24 2014 - 00:03:32 PST)
Marcus Arieno
- Re: [AMBER] Correct script for B-factor (Fri Nov 28 2014 - 08:06:43 PST)
Marek Maly
- Re: [AMBER] Questions regarding GB simulations in Amber14 - ff14SBonlysc vs ff14SB - igb1 vs igb8 - hydrphobic force (Sun Nov 23 2014 - 18:40:49 PST)
- [AMBER] Questions regarding GB simulations in Amber14 - ff14SBonlysc vs ff14SB - igb1 vs igb8 - hydrphobic force (Fri Nov 21 2014 - 17:58:14 PST)
Maria Diaz
- [AMBER] cyclic peptide side chains (Fri Nov 21 2014 - 02:43:50 PST)
Mary Varughese
- Re: [AMBER] doubt in RMD (Sat Nov 29 2014 - 04:40:02 PST)
- Re: [AMBER] hydophobicity (Thu Nov 27 2014 - 09:43:11 PST)
- Re: [AMBER] doubt in RMD (Thu Nov 27 2014 - 09:40:22 PST)
- Re: [AMBER] hydophobicity (Wed Nov 26 2014 - 22:00:03 PST)
- Re: [AMBER] doubt in RMD (Wed Nov 26 2014 - 21:58:04 PST)
- [AMBER] hydophobicity (Mon Nov 24 2014 - 23:59:24 PST)
- [AMBER] doubt in RMD (Mon Nov 24 2014 - 23:57:32 PST)
- Re: [AMBER] bond distances in amber (Sun Nov 09 2014 - 01:59:20 PST)
- Re: [AMBER] hbonds (Sat Nov 08 2014 - 09:23:36 PST)
- Re: [AMBER] bond distances in amber (Sat Nov 08 2014 - 09:15:21 PST)
- [AMBER] hbonds (Fri Nov 07 2014 - 02:27:10 PST)
- [AMBER] bond distances in amber (Fri Nov 07 2014 - 01:47:53 PST)
maryam azimzadehirani
- Re: [AMBER] Glycan bond error leap (Mon Nov 24 2014 - 20:51:35 PST)
- [AMBER] Glycan bond error leap (Mon Nov 24 2014 - 00:11:31 PST)
- Re: [AMBER] aMD error (Wed Nov 05 2014 - 00:37:43 PST)
- [AMBER] aMD error (Mon Nov 03 2014 - 23:23:10 PST)
Massimiliano Porrini
- Re: [AMBER] Fully random MPI error after updating CentOS from release 6.5 to 6.6 (Mon Nov 03 2014 - 08:25:52 PST)
- [AMBER] Fully random MPI error after updating CentOS from release 6.5 to 6.6 (Mon Nov 03 2014 - 02:54:20 PST)
Mele N.
- [AMBER] H-REMD (Wed Nov 05 2014 - 08:20:33 PST)
Mina Madah
- [AMBER] MMPBSA warning : No skew or curtosis when zero variance in moment (Mon Nov 17 2014 - 00:23:22 PST)
mmaestre.gate.sinica.edu.tw
- Re: [AMBER] Calcium vdW parameters (Fri Nov 28 2014 - 19:15:03 PST)
nabil bennenni
- Re: [AMBER] cpptraj (Tue Nov 11 2014 - 11:55:42 PST)
- Re: [AMBER] problem reimaging after strip WAT (Tue Nov 11 2014 - 09:16:06 PST)
- Re: [AMBER] simulation of peptide in alkane slab (Sat Nov 08 2014 - 11:15:49 PST)
Nalini Chauhan
- [AMBER] PARALLEL INSTALLATION ERROR (Sun Nov 30 2014 - 03:47:23 PST)
Niel Henriksen
- Re: [AMBER] nmr restraints and periodic boundary conditions (Tue Nov 18 2014 - 15:02:07 PST)
- Re: [AMBER] bond distances in amber (Sat Nov 08 2014 - 15:31:08 PST)
Pablo D. Dans Puiggròs
- Re: [AMBER] problem reimaging after strip WAT (Tue Nov 11 2014 - 08:24:03 PST)
- Re: [AMBER] problem reimaging after strip WAT (Tue Nov 11 2014 - 07:59:36 PST)
- [AMBER] problem reimaging after strip WAT (Tue Nov 11 2014 - 07:24:34 PST)
Parker de Waal
- Re: [AMBER] Installation error: recipe for target 'pupildata.o' failed (Sun Nov 23 2014 - 18:18:10 PST)
- Re: [AMBER] 4x GTX 980 (Sun Nov 23 2014 - 17:32:46 PST)
- Re: [AMBER] 4x GTX 980 (Sun Nov 23 2014 - 16:51:16 PST)
- Re: [AMBER] 4x GTX 980 (Sun Nov 23 2014 - 16:22:22 PST)
- Re: [AMBER] Installation error: recipe for target 'pupildata.o' failed (Sun Nov 23 2014 - 13:59:02 PST)
- Re: [AMBER] Installation error: recipe for target 'pupildata.o' failed (Sun Nov 23 2014 - 08:24:25 PST)
- Re: [AMBER] Installation error: recipe for target 'pupildata.o' failed (Sat Nov 22 2014 - 19:47:44 PST)
- Re: [AMBER] Installation error: recipe for target 'pupildata.o' failed (Sat Nov 22 2014 - 17:03:29 PST)
- [AMBER] Installation error: recipe for target 'pupildata.o' failed (Sat Nov 22 2014 - 14:37:30 PST)
- [AMBER] 4x GTX 980 (Sun Nov 16 2014 - 18:28:07 PST)
Pawel Janowski
- Re: [AMBER] Is there a tool to calculate electron density maps averaged over a trajectory? (Mon Nov 24 2014 - 14:43:57 PST)
Pengfei Li
- Re: [AMBER] Help generating Heme parameters (Fri Nov 21 2014 - 07:18:00 PST)
Perry, Jamin W.
- Re: [AMBER] Issue with DFTB-MD trajectory (Sun Nov 16 2014 - 22:19:05 PST)
- [AMBER] Issue with DFTB-MD trajectory (Sun Nov 09 2014 - 14:02:08 PST)
Pete Kekenes-Huskey
- Re: [AMBER] Problem regarding Chamber and psf file (Sun Nov 02 2014 - 17:18:23 PST)
Petr Jurecka
- Re: [AMBER] Forcefield for DNA (Tue Nov 25 2014 - 01:52:22 PST)
pradeep pant
- [AMBER] 100ps long minimization script (Sun Nov 30 2014 - 05:38:01 PST)
psu4.uic.edu
- [AMBER] pmemd.MPI thermodynamic integration (TI) relative binding free energy set up (Fri Nov 14 2014 - 14:32:49 PST)
Ray Luo, Ph.D.
- Re: [AMBER] PBSA error (Thu Nov 20 2014 - 14:49:07 PST)
Robin Betz
- Re: [AMBER] Error in CHAMBER output (Wed Nov 19 2014 - 22:23:33 PST)
Robin Jain
- Re: [AMBER] AMBER Digest, Vol 1045, Issue 1 (Sat Nov 22 2014 - 00:25:58 PST)
- [AMBER] cut value in minimisation (Thu Nov 20 2014 - 23:17:49 PST)
- [AMBER] box size changing during equilibration (Wed Nov 19 2014 - 07:20:29 PST)
- Re: [AMBER] AMBER Digest, Vol 1041, Issue 1 (Tue Nov 18 2014 - 07:34:02 PST)
- Re: [AMBER] help (Mon Nov 17 2014 - 09:30:41 PST)
- [AMBER] help in MD (Wed Nov 12 2014 - 23:48:20 PST)
- [AMBER] help (Wed Nov 12 2014 - 21:59:24 PST)
ROOPALI VERMA
- Re: [AMBER] ERROR DURING "TESTING" OF AMBER INSTALLATION (Wed Nov 19 2014 - 22:55:27 PST)
- Re: [AMBER] ERROR DURING "TESTING" OF AMBER INSTALLATION (Tue Nov 18 2014 - 22:43:38 PST)
- [AMBER] ERROR DURING "TESTING" OF AMBER INSTALLATION (Mon Nov 17 2014 - 23:47:31 PST)
Ross Walker
- Re: [AMBER] GTX 780 Ti & GTX 980 (Wed Nov 26 2014 - 13:18:39 PST)
- Re: [AMBER] Counseling about the GPU series supporting PMEMD (Sun Nov 23 2014 - 23:11:56 PST)
- Re: [AMBER] 4x GTX 980 (Sun Nov 23 2014 - 18:03:50 PST)
- Re: [AMBER] 4x GTX 980 (Sun Nov 23 2014 - 18:02:57 PST)
- Re: [AMBER] 4x GTX 980 (Sun Nov 23 2014 - 18:01:29 PST)
- Re: [AMBER] Errors compiling Amber 14 after applying update 7 (Thu Nov 20 2014 - 12:38:46 PST)
- [AMBER] Reminder: NBCR AMBER Workshop - UCSD - Mon Dec 15th to Thur Dec 18th 2014 - Registration open. (Wed Nov 19 2014 - 21:39:51 PST)
- Re: [AMBER] GPU enabled Hardware specification (Mon Nov 17 2014 - 11:35:24 PST)
- Re: [AMBER] GPU enabled Hardware specification (Sun Nov 16 2014 - 12:22:46 PST)
- Re: [AMBER] GPU enabled Hardware specification (Sat Nov 15 2014 - 12:49:49 PST)
- [AMBER] NBCR AMBER Workshop - UCSD - Mon Dec 15th to Thur Dec 18th 2014 - Registration open. (Wed Nov 05 2014 - 12:40:05 PST)
- Re: [AMBER] problem using pmemd.cuda with barostat=2 option (Wed Nov 05 2014 - 09:41:58 PST)
Ruchika Bhat
- [AMBER] HEAT and PROD files for 10 ns run (Sat Nov 08 2014 - 08:45:44 PST)
- Re: [AMBER] Help needed regarding Ligand Protein MD studies (Sat Nov 08 2014 - 07:47:27 PST)
- Re: [AMBER] Help needed regarding Ligand Protein MD studies (Fri Nov 07 2014 - 10:16:27 PST)
- Re: [AMBER] Help needed regarding Ligand Protein MD studies (Fri Nov 07 2014 - 10:11:11 PST)
- Re: [AMBER] Help needed regarding Ligand Protein MD studies (Fri Nov 07 2014 - 06:47:01 PST)
- [AMBER] Help needed regarding Ligand Protein MD studies (Fri Nov 07 2014 - 05:39:07 PST)
- Re: [AMBER] DRUG_PROTEIN INTERACTIOM (Fri Nov 07 2014 - 01:00:58 PST)
- [AMBER] DRUG_PROTEIN INTERACTIOM (Thu Nov 06 2014 - 22:53:11 PST)
sailu
- [AMBER] Metal parameterization (Fri Nov 28 2014 - 20:50:46 PST)
samarprit chakraborty
- Re: [AMBER] simulation of peptide in alkane slab (Sun Nov 09 2014 - 02:38:23 PST)
- [AMBER] simulation of peptide in alkane slab (Sat Nov 08 2014 - 09:43:30 PST)
Sangita Kachhap
- Re: [AMBER] NVT and NPT ensemble (Mon Nov 03 2014 - 06:20:37 PST)
- Re: [AMBER] NVT and NPT ensemble (Mon Nov 03 2014 - 05:56:21 PST)
- Re: [AMBER] NVT and NPT ensemble (Sun Nov 02 2014 - 21:07:05 PST)
Scott Le Grand
- Re: [AMBER] 4x GTX 980 (Sun Nov 23 2014 - 17:34:40 PST)
- Re: [AMBER] 4x GTX 980 (Sun Nov 23 2014 - 17:26:41 PST)
- Re: [AMBER] 4x GTX 980 (Sun Nov 23 2014 - 16:32:38 PST)
- Re: [AMBER] 4x GTX 980 (Sun Nov 23 2014 - 16:31:34 PST)
- Re: [AMBER] 4x GTX 980 (Mon Nov 17 2014 - 14:42:53 PST)
- Re: [AMBER] problem using pmemd.cuda with barostat=2 option (Wed Nov 05 2014 - 10:23:44 PST)
Sorensen, Jesper
- Re: [AMBER] problem using pmemd.cuda with barostat=2 option (Wed Nov 05 2014 - 12:27:36 PST)
- Re: [AMBER] problem using pmemd.cuda with barostat=2 option (Wed Nov 05 2014 - 10:18:57 PST)
Soumendranath Bhakat
- Re: [AMBER] Correct script for B-factor (Fri Nov 28 2014 - 19:37:22 PST)
- [AMBER] Correct script for B-factor (Fri Nov 28 2014 - 07:38:19 PST)
- [AMBER] Interaction energy between two dimer unit (Thu Nov 27 2014 - 21:26:21 PST)
Sourav Purohit
- Re: [AMBER] MMPBSA.py normal mode analysis (Mon Nov 17 2014 - 12:08:53 PST)
- [AMBER] MMPBSA.py normal mode analysis (Mon Nov 17 2014 - 12:00:19 PST)
- [AMBER] MMPBSA.py nmode (Sun Nov 16 2014 - 18:13:37 PST)
- [AMBER] MMPBSA.py (Sun Nov 09 2014 - 11:20:22 PST)
sun
- [AMBER] Thermodynamic integration: Delta G of less soft core atoms is different from the one with more soft core atoms (Mon Nov 24 2014 - 08:10:22 PST)
- [AMBER] error message of addLJType of parmed: Action addLJType failed. UnhandledArgumentWarning: 0.0 0.0 (Mon Nov 03 2014 - 08:11:57 PST)
Sylvester Tumusiime
- [AMBER] Prmtop (Sat Nov 15 2014 - 08:55:40 PST)
- Re: [AMBER] cpptraj (Tue Nov 11 2014 - 11:58:39 PST)
- [AMBER] cpptraj (Tue Nov 11 2014 - 11:30:23 PST)
- Re: [AMBER] writing out restart files in netcdf format (Fri Nov 07 2014 - 08:33:13 PST)
- [AMBER] writing out restart files in netcdf format (Fri Nov 07 2014 - 08:24:41 PST)
Vijay Achari
- [AMBER] installing amber12 in GPU (Fri Nov 28 2014 - 05:49:35 PST)
vojtech.mlynsky.upol.cz
- Re: [AMBER] confirm b31b76c2dc0c4f0c33e4cac638252d6c6723f46d (Wed Nov 26 2014 - 01:43:56 PST)
Wei Ye
- Re: [AMBER] Help needed regarding Ligand Protein MD studies (Fri Nov 07 2014 - 06:52:31 PST)
- Re: [AMBER] Help needed regarding Ligand Protein MD studies (Fri Nov 07 2014 - 06:17:02 PST)
- Re: [AMBER] Problems on PRMTOP file generation under ff02pol.r1 (Fri Nov 07 2014 - 06:01:54 PST)
- Re: [AMBER] DRUG_PROTEIN INTERACTIOM (Fri Nov 07 2014 - 04:28:06 PST)
- Re: [AMBER] DRUG_PROTEIN INTERACTIOM (Thu Nov 06 2014 - 23:57:40 PST)
- [AMBER] Problems on PRMTOP file generation under ff02pol.r1 (Thu Nov 06 2014 - 20:09:02 PST)
Weinzierl, Robert O J
- [AMBER] xLEaP Na+ Cl- (Thu Nov 27 2014 - 04:01:03 PST)
Wong, Sook (NIH/NCATS) [V]
- [AMBER] Entropy using Nmode (Fri Nov 14 2014 - 10:57:38 PST)
- Re: [AMBER] Binding energy using mm_pbsa.pl (Fri Nov 07 2014 - 13:15:03 PST)
- Re: [AMBER] Binding energy using mm_pbsa.pl (Thu Nov 06 2014 - 12:54:14 PST)
- Re: [AMBER] Binding energy using mm_pbsa.pl (Thu Nov 06 2014 - 12:24:03 PST)
- Re: [AMBER] Binding energy using mm_pbsa.pl (Thu Nov 06 2014 - 12:05:34 PST)
- [AMBER] Binding energy using mm_pbsa.pl (Thu Nov 06 2014 - 08:28:57 PST)
Ying-Chieh Sun
- Re: [AMBER] error message of addLJType of parmed: Action addLJType failed. UnhandledArgumentWarning: 0.0 0.0 (Mon Nov 03 2014 - 18:40:24 PST)
Yip Yew Mun
- [AMBER] Is it possible to extract atomic charge information from the trajectory? (Tue Nov 18 2014 - 18:53:20 PST)
Zgarbova Marie
- [AMBER] confirm b31b76c2dc0c4f0c33e4cac638252d6c6723f46d (Mon Nov 24 2014 - 12:56:57 PST)
ZHAO Ruisheng
- Re: [AMBER] a problem on heating the system (Tue Nov 11 2014 - 04:53:02 PST)
- Re: [AMBER] a problem on heating the system (Tue Nov 11 2014 - 00:32:16 PST)
- [AMBER] a problem on heating the system (Mon Nov 10 2014 - 05:25:56 PST)
曲薇
- [AMBER] AMBER Question: Setting box angle in tleap (Wed Nov 05 2014 - 01:22:48 PST)
杨川
- [AMBER] Help generating Heme parameters (Tue Nov 18 2014 - 23:20:29 PST)
汪小涧
- [AMBER] Amber 14 installation problems (Thu Nov 13 2014 - 19:07:29 PST)
王漠野
- Re: [AMBER] The question about REMD exchange ratio (Thu Nov 13 2014 - 17:34:09 PST)
- [AMBER] The question about REMD exchange ratio (Wed Nov 12 2014 - 22:43:55 PST)
- [AMBER] The question about REMD exchange ratio (Mon Nov 03 2014 - 05:12:50 PST)

Amber Archive Nov 2014 by author