[AMBER] Forcefield for DNA

From: Baifan Wang <ferlich.comput.gmail.com>
Date: Mon, 24 Nov 2014 15:55:15 +0100

Dear Amber Users,



I currently start to simulate the DNA G-quadruplex. The manual of Amber14
recommends that the combination of ff99 + bsc0 + ε/ζOL1+ χOL4 forcefields
would have better performance.The manual indicated that, “The appropriate
leaprc file will be made available soon as an update to AmberTools.”. My
AmberTools has been updated to the nearest version, it seems that the
leaprc file is still unavailable. So how can I employ these force field to
my simulation?



With kind regards,



Baifan Wang



Kemijski inštitut
Ljubljana
Slovenija
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Nov 24 2014 - 07:00:02 PST
Custom Search