Amber Archive Nov 2014: by messages with attachments

[AMBER] The question about REMD exchange ratio 王漠野 (Mon Nov 03 2014 - 05:12:50 PST)
1. 1.png (45799 bytes)
2. 2.png (44183 bytes)
3. QQ______20141103200906.png (5379 bytes)
Re: [AMBER] Imaging Daniel Roe (Mon Nov 03 2014 - 10:45:09 PST)
1. A.solvent.jpg (87425 bytes)
2. density.jpg (140329 bytes)
[AMBER] bug in pmemd softcore TI with SHAKE Hannes Loeffler (Tue Nov 04 2014 - 02:07:39 PST)
1. e2m_m2e.png (9916 bytes)
2. e2m_m2e.agr (13252 bytes)
[AMBER] Transition state John Smith (Mon Nov 10 2014 - 10:13:36 PST)
1. image.png (4370 bytes)
Re: [AMBER] problem reimaging after strip WAT Pablo D. Dans Puiggròs (Tue Nov 11 2014 - 08:24:03 PST)
1. 11-11_17:15:34.png (57107 bytes)
2. 11-11_17:15:09.png (57818 bytes)
3. 11-11_17:14:48.png (58985 bytes)
4. 11-11_17:14:24.png (57304 bytes)
[AMBER] The question about REMD exchange ratio 王漠野 (Wed Nov 12 2014 - 22:43:55 PST)
1. 1.png (45799 bytes)
2. 2.png (44183 bytes)
3. QQ______20141103200906.png (5379 bytes)
[AMBER] Transition state Mahmood Jasim (Thu Nov 13 2014 - 01:43:51 PST)
1. image.png (4370 bytes)
[AMBER] minimization problem Emilio Angelina (Thu Nov 13 2014 - 12:52:28 PST)
1. Br-noEP_min.pdb (281267 bytes)
2. Br-noEP.pdb (196610 bytes)
3. Br-noEP.prmtop (31720 bytes)
4. Br-noEP2.frcmod (5650 bytes)
Re: [AMBER] options "-ext" and "-pqr" of ambpdb are exlusive David A Case (Fri Nov 14 2014 - 05:19:36 PST)
1. ambpdb.F90 (42283 bytes)
[AMBER] Entropy using Nmode Wong, Sook (NIH/NCATS) [V] (Fri Nov 14 2014 - 10:57:38 PST)
1. M.csh.e54335 (17073 bytes)
[AMBER] Postdoctoral Position at the U.S. Army Research Laboratory in Coarse-Grain Modeling and Simulation Izvyekov, Sergiy (Sergey) CIV USARMY ARL (US) (Fri Nov 14 2014 - 13:11:51 PST)
1. smime.p7s (5625 bytes)
[AMBER] amber error about protein containing heme Fatemeh Sadat Alavi (Tue Nov 18 2014 - 02:37:16 PST)
1. error.txt (11289 bytes)
2. heme.frcmod (2924 bytes)
3. hemeall.in (7078 bytes)
Re: [AMBER] ERROR DURING "TESTING" OF AMBER INSTALLATION ROOPALI VERMA (Tue Nov 18 2014 - 22:43:38 PST)
1. 11-15_14-11-13.diff (299830 bytes)
2. 11-15_14-11-13.log (100074 bytes)
[AMBER] Help generating Heme parameters 杨川 (Tue Nov 18 2014 - 23:20:29 PST)
1. Heme_cysteine.pdb (4406 bytes)
Re: [AMBER] Errors compiling Amber 14 after applying update 7 David A Case (Thu Nov 20 2014 - 12:33:32 PST)
1. shake.patch (985 bytes)
[AMBER] errors in qm/mm Ayesha Fatima (Sun Nov 23 2014 - 22:10:57 PST)
1. eq-qmdftb.in (600 bytes)
[AMBER] PARALLEL INSTALLATION ERROR Nalini Chauhan (Sun Nov 30 2014 - 03:47:23 PST)
1. mylog.log (195352 bytes)

Amber Archive Nov 2014 by messages with attachments