./test_amber_clean.sh ./test_amber_parallel.sh make[1]: Entering directory `/home/user/amber12/test' export TESTsander=/home/user/amber12/bin/sander.MPI; make -k test.sander.BASIC make[2]: Entering directory `/home/user/amber12/test' cd cytosine && ./Run.cytosine [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.cytosine: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd nonper && ./Run.nonper [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nonper: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd nonper && ./Run.nonper.belly [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nonper.belly: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd nonper && ./Run.nonper.belly.mask [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd nonper && ./Run.nonper.min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nonper.min: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd nonper && ./Run.cap [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.cap: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd nonper && ./Run.nonper.nocut [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nonper.nocut: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd tip4p && ./Run.tip4p [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tip4p: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd tip4p && ./Run.tip4p_nve [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tip4p_nve: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd tip5p && ./Run.tip5p [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tip5p: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd tip5p && ./Run.tip5p_nve [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tip5p_nve: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd 4096wat && ./Run.pure_wat [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pure_wat: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd 4096wat && ./Run.pure_wat_nmr_temp_reg [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pure_wat_nmr_temp_reg: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd 4096wat && ./Run.vrand [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.vrand: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd 4096wat_oct && ./Run.pure_wat_oct [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pure_wat_oct: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd dhfr && ./Run.dhfr && ./Run.dhfr prmtop_an [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd dhfr && ./Run.dhfr.noboxinfo cat: mdout.dhfr.noboxinfo: No such file or directory diffing mdout.dhfr.noboxinfo.save with mdout.dhfr.noboxinfo possible FAILURE: check mdout.dhfr.noboxinfo.dif ============================================================== cd dhfr && ./Run.dhfr.noshake [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr.noshake: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd dhfr && ./Run.dhfr.min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr.min: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd dhfr && ./Run.dhfr.min_prcg [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr.min_prcg: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd dhfr && ./Run.dhfr.lmodxmin [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr.lmodxmin: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd variable_14 && ./Run.variable_14_ntb1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.variable_14_ntb1: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd gact_ips && ./Run.ips [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ips: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd gact_ips && ./Run.ipsnve [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ipsnve: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd gact_ips && ./Run.ips_sgld [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ips_sgld: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd gact_ips && ./Run.ips_sgldfp [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ips_sgldfp: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd gact_ips && ./Run.ips_dfft [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ips_dfft: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd gact_ips && ./Run.ips_vacuum [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ips_vacuum: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd polarizable_water && ./Run.pol_wat [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pol_wat: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd ubiquitin && ./Run.ubiquitin [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ubiquitin: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd dna_pol && ./Run.dna_pol I am NANO36 [proxy:0:0@NANO36] launch_procs (pm/pmiserv/pmip_cb.c:640): [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dna_pol: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd trx && ./Run.trx [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trx: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd trx && ./Run.trx.cpln [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trx.cpln: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd rdc && ./Run.dip [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dip: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd rdc && ./Run.csa [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.csa: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd rdc && ./Run.csa_min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.csa_min: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd pcsa && ./Run.dip [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dip: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd pcsa && ./Run.csa [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.csa: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd pcsa && ./Run.csa2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.csa2: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd pcsa && ./Run.csa_min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.csa_min: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd tgtmd/change_target && ./Run.tgtmd SANDER: Targeted MD with changing target [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tgtmd: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd tgtmd/change_target.rms && ./Run.tgtmd SANDER: Targeted MD with changing target and fit/rmsd to different regions [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tgtmd: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd tgtmd/change_target.ntr && ./Run.tgtmd SANDER: Targeted MD with changing target and restraints DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting (Max = 2) ============================================================ cd tgtmd/conserve_ene && ./Run.tgtmd SANDER: Targeted MD energy conservation test [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tgtmd: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd tgtmd/minimize && ./Run.tgtmin SANDER: Targeted minimization [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tgtmin: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd tgtmd/PME && ./Run.tgtPME SANDER: Targeted MD with PME [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tgtPME: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd mtmdtest && ./Run.mtmdtest SANDER: Multiply-targeted MD, new to AMBER 11 Tested on an RNA duplex. [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.mtmdtest: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd trajene && ./Run.trajene [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trajene: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd trajene_box && ./Run.trajene DO_PARALLEL set to mpirun -np 6 This test cannot be run with more than 1 processor, exiting. ============================================================ cd trajene_netcdf && ./Run.trajene /home/user/amber12/include/netcdf.mod [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trajene: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd alp && ./Run.alp [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.alp: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd umbrella && ./Run.umbrella [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.umbrella: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd noesy && ./Run.noesy [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.noesy: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd jar && ./Run.jarz [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jarz: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd plane_plane_restraint && ./Run.dinuc_plpt SANDER: Dinucleoside restrained with new plane-point angle restraint that was defined with new natural language restraint input. DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting (Max = 2) ============================================================ cd plane_plane_restraint && ./Run.dinuc_pln SANDER: Dinucleoside restrained with new plane-plane angle restraint that was defined with new natural language restraint input. DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting (Max = 2) ============================================================ cd iwrap2 && ./Run.iwrap2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.iwrap2: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd idecomp1 && ./run_idecomp1.sh [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./run_idecomp1.sh: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd idecomp4 && ./run_idecomp4.sh [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./run_idecomp4.sh: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd bintraj && ./Run.bintraj [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.bintraj: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd nc_restart && make -k test make[3]: Entering directory `/home/user/amber12/test/nc_restart' Netcdf MD Restart Write Test [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion cat: textmd.rst7: No such file or directory diffing textmd.rst7.save with textmd.rst7 file ddtmp.textmd.rst7 is short possible FAILURE: check textmd.rst7.dif ============================================================== Netcdf Minimization Restart Write Test [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion cat: textmin.rst7: No such file or directory diffing textmin.rst7.save with textmin.rst7 file ddtmp.textmin.rst7 is short possible FAILURE: check textmin.rst7.dif ============================================================== Restrained MD with netcdf Restart Reference Coords Test [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion cat: md.rst7: No such file or directory diffing md.rst7.save with md.rst7 file ddtmp.md.rst7 is short possible FAILURE: check md.rst7.dif ============================================================== cat: md.out: No such file or directory diffing md.out.save with md.out possible FAILURE: check md.out.dif ============================================================== Netcdf MD restart read test, ntx=5 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion cat: md1.rst7: No such file or directory cat: md2.rst7: No such file or directory diffing md1.rst7 with md2.rst7 PASSED /bin/rm: cannot remove `md2.rst7': No such file or directory ============================================================== cat: md.out: No such file or directory diffing md.out.save with md.out possible FAILURE: check md.out.dif ============================================================== Netcdf MD restart read test, ntx=1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion cat: md1.rst7: No such file or directory cat: md2.rst7: No such file or directory diffing md1.rst7 with md2.rst7 PASSED /bin/rm: cannot remove `md2.rst7': No such file or directory ============================================================== cat: md.out: No such file or directory diffing md.out.save with md.out possible FAILURE: check md.out.dif ============================================================== make[3]: Leaving directory `/home/user/amber12/test/nc_restart' cd csurften && ./Run.csurften_z-dir [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.csurften_z-dir: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd csurften && ./Run.csurften_z-dir_npt_3 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.csurften_z-dir_npt_3: Program error make[2]: [test.sander.BASIC] Error 1 (ignored) cd nmropt && make all make[3]: Entering directory `/home/user/amber12/test/nmropt' cd gb/angle && ./Run.nmropt_1angle_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1angle_gb: Program error make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/distance && ./Run.dist_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dist_gb: Program error make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/distance_COM && ./Run.distCOM_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.distCOM_gb: Program error make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/jar_distance && ./Run.jar_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_gb: Program error make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/jar_distance_COM && ./Run.jar_gb I am NANO37 I am NANO36 I am NANO38 [proxy:0:0@NANO36] launch_procs (pm/pmiserv/pmip_cb.c:640): [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_gb: Program error make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/jar_torsion && ./Run.jar_torsion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_torsion: Program error make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/nmropt_1_torsion && ./Run.nmropt_1_torsion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1_torsion: Program error make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/tautp && ./Run.nmropt_1tautp_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1tautp_gb: Program error make[3]: [pmemd_compat_gb] Error 1 (ignored) cd gb/temp && ./Run.nmropt_1temp_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1temp_gb: Program error make[3]: [pmemd_compat_gb] Error 1 (ignored) cd pme/angle && ./Run.nmropt_1angle_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1angle_pbc: Program error make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/distance && ./Run.dist_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dist_pbc: Program error make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/distance_COM && ./Run.distCOM_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.distCOM_pbc: Program error make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/jar_torsion && ./Run.jar_torsion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_torsion: Program error make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/jar_distance && ./Run.jar_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_pbc: Program error make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/jar_distance_COM && ./Run.jar_pbc I am NANO36 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_pbc: Program error make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/nmropt_1_torsion && ./Run.nmropt_1_torsion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1_torsion: Program error make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/tautp && ./Run.nmropt_1tautp_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1tautp_pbc: Program error make[3]: [pmemd_compat_pme] Error 1 (ignored) cd pme/temp && ./Run.nmropt_1temp_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1temp_pbc: Program error make[3]: [pmemd_compat_pme] Error 1 (ignored) cd gb/2xangle && ./Run.nmropt_1_2xangle_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1_2xangle_gb: Program error make[3]: [pmemd_incompat_gb] Error 1 (ignored) cd gb/jar_comtorsion && ./Run.jar_comtorsion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_comtorsion: Program error make[3]: [pmemd_incompat_gb] Error 1 (ignored) cd gb/jar_lcod && ./Run.lcod_jar [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.lcod_jar: Program error make[3]: [pmemd_incompat_gb] Error 1 (ignored) cd gb/jar_lcod_dist && ./Run.jar_lcod [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_lcod: Program error make[3]: [pmemd_incompat_gb] Error 1 (ignored) cd gb/lcod && ./Run.lcod [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.lcod: Program error make[3]: [pmemd_incompat_gb] Error 1 (ignored) cd gb/lcod_com && ./Run.lcod_com [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.lcod_com: Program error make[3]: [pmemd_incompat_gb] Error 1 (ignored) cd gb/nmropt_1_2xtorsion && ./Run.nmropt_1_2xtorsion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1_2xtorsion: Program error make[3]: [pmemd_incompat_gb] Error 1 (ignored) cd pme/2xangle && ./Run.nmropt_1_2xangle_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1_2xangle_pbc: Program error make[3]: [pmemd_incompat_pme] Error 1 (ignored) cd pme/jar_comtorsion && ./Run.jar_comtorsion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_comtorsion: Program error make[3]: [pmemd_incompat_pme] Error 1 (ignored) cd pme/jar_lcod && ./Run.jar_lcod [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_lcod: Program error make[3]: [pmemd_incompat_pme] Error 1 (ignored) cd pme/jar_lcod_dist && ./Run.lcod_dist [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.lcod_dist: Program error make[3]: [pmemd_incompat_pme] Error 1 (ignored) cd pme/lcod && ./Run.lcod_pme [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.lcod_pme: Program error make[3]: [pmemd_incompat_pme] Error 1 (ignored) cd pme/lcod_com && ./Run.lcod_com [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.lcod_com: Program error make[3]: [pmemd_incompat_pme] Error 1 (ignored) cd pme/nmropt_1_2xtorsion && ./Run.nmropt_1_2xtorsion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1_2xtorsion: Program error make[3]: [pmemd_incompat_pme] Error 1 (ignored) make[3]: Leaving directory `/home/user/amber12/test/nmropt' make[2]: Leaving directory `/home/user/amber12/test' export TESTsander=/home/user/amber12/bin/sander.MPI; cd 4096wat && ./Run.column_fft [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.column_fft: Program error make[1]: [test.sander.BASIC.MPI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd jar_multi && ./Run.jarz [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jarz: Program error make[1]: [test.sander.BASIC.MPI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd ti_eth2meth_gas && ./Run.test1 DO_PARALLEL set to mpirun -np 6 number of processors for this test > 2, exiting... ============================================================ export TESTsander=/home/user/amber12/bin/sander.MPI; cd ti_eth2meth_gas && ./Run.test2 DO_PARALLEL set to mpirun -np 6 number of processors for this test > 2, exiting... ============================================================ export TESTsander=/home/user/amber12/bin/sander.MPI; cd ti_ggcc && ./Run.test1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.test1: Program error make[1]: [test.sander.BASIC.MPI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd ti_ggcc && ./Run.test2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.test2: Program error make[1]: [test.sander.BASIC.MPI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd csurften && ./Run.csurften_z-dir [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.csurften_z-dir: Program error make[1]: [test.sander.BASIC.MPI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd csurften && ./Run.csurften_z-dir_npt_3 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.csurften_z-dir_npt_3: Program error make[1]: [test.sander.BASIC.MPI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; make -k test.sander.GB make[2]: Entering directory `/home/user/amber12/test' cd gb_rna && ./Run.gbrna [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gbrna: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd gb_rna && ./Run.gbrna.min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gbrna.min: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd gb_rna && ./Run.gbrna.ln [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gbrna.ln: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd gb_rna && ./Run.gbrna.ips [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gbrna.ips: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd gb_rna && ./Run.gbrna.sgld [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gbrna.sgld: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd gb_rna && ./Run.gbrna.sgldfp [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gbrna.sgldfp: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd gbsa_xfin && ./Run.gbsa [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gbsa: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd circ_dna && ./Run.circdna [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.circdna: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd gb2_trx && ./Run.trxox [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trxox: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd gb7_trx && ./Run.trxox && ./Run.trxox prmtop_an [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trxox: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd gb7_trx && ./Run.trxox_md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trxox_md: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd gb8_trx && ./Run.trxox [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trxox: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd gb8_trx && ./Run.trxox_md && ./Run.trxox_md prmtop_an [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trxox_md: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd alpb_trx && ./Run.trxox [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trxox: Program error make[2]: [test.sander.GB] Error 1 (ignored) cd gb1_cox2 && ./Run.cox2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.cox2: Program error make[2]: [test.sander.GB] Error 1 (ignored) make[2]: Leaving directory `/home/user/amber12/test' export TESTsander=/home/user/amber12/bin/sander.MPI; cd rem_gb_2rep && ./Run.rem [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rem: Program error make[1]: [test.sander.REM] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd rem_gb_4rep && ./Run.rem [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rem: line 22: [: too many arguments [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rem: Program error make[1]: [test.sander.REM] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd rem_wat && ./Run.rem [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rem: Program error make[1]: [test.sander.REM] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd rem_hybrid && ./Run.rem /bin/rm: No match. [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion cat: rem.log: No such file or directory diffing rem.log.save with rem.log possible FAILURE: check rem.log.dif ============================================================== cat: rem.out.000: No such file or directory diffing rem.out.000.save with rem.out.000 file ddtmp.rem.out.000 is short possible FAILURE: check rem.out.000.dif ============================================================== /bin/rm: No match. export TESTsander=/home/user/amber12/bin/sander.MPI; cd h_rem && ./Run.rem [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rem: line 22: [: too many arguments [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rem: Program error make[1]: [test.sander.REM] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd sodium && ./Run.sodium [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.sodium: Program error make[1]: [test.sander.TI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd pheMTI && ./Run.0 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.0: Program error make[1]: [test.sander.TI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd pheMTI && ./Run.1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1: Program error make[1]: [test.sander.TI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd pheMTI && ./Run.lambda0 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.lambda0: Program error make[1]: [test.sander.TI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd pheMTI && ./Run.lambda1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.lambda1: Program error make[1]: [test.sander.TI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd campTI && ./Run.campTI [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.campTI: Program error make[1]: [test.sander.TI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd softcore && ./Run_sc Running the Softcore potential tests ============================================================== Minimization test DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ Protein-Ligand complex test [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.complex: Program error ============================================================== Solvation free energy test [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.toluene: Program error [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.toluene2: Program error ============================================================== Dynamic lambda test [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dynlmb: Program error ============================================================== Restrained complex test [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.complex_rst: Program error ============================================================== Using softcore electrostatics [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ethanol: Program error ============================================================== Soft core test suite complete ============================================================== export TESTsander=/home/user/amber12/bin/sander.MPI; cd ti_decomp; ./Run.ti_decomp [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ti_decomp: Program error make[1]: [test.sander.TI] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; cd ti_decomp; ./Run.ti_decomp_sc DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ export TESTsanderLES=/home/user/amber12/bin/sander.LES.MPI; make -k test.sander.LES make[2]: Entering directory `/home/user/amber12/test' cd LES_noPME && ./Run.LESmd SANDER: LES MD gas phase [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.LESmd: Program error make[2]: [test.sander.LES] Error 1 (ignored) cd LES_noPME && ./Run.LESmd.rdiel SANDER: LES MD gas phase rdiel [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.LESmd.rdiel: Program error make[2]: [test.sander.LES] Error 1 (ignored) cd LES && ./Run.PME_LES Amber 8 ADDLES and SANDER.LES test: addles: diffing output_addles.save with output_addles PASSED ============================================================== diffing LES.crd.save with LES.crd PASSED ============================================================== diffing LES.prmtop.save with LES.prmtop PASSED ============================================================== sander.LES: [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.PME_LES: Program error make[2]: [test.sander.LES] Error 1 (ignored) cd LES_CUT && ./Run.LES Amber 10 SANDER.LES test, no PME [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.LES: Program error make[2]: [test.sander.LES] Error 1 (ignored) cd LES_TEMP && ./Run.2temp SANDER: LES T coupling [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.2temp: Program error make[2]: [test.sander.LES] Error 1 (ignored) cd LES_GB && ./Run.LES SANDER: LES+GB DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ make[2]: Leaving directory `/home/user/amber12/test' cd neb-testcases/neb_gb_partial && ./Run.neb_gb_partial This test case requires a least 4 mpi threads. The number of mpi threads must also be a multiple of 4 and not more than 12. Not running test, exiting..... cd neb-testcases/neb_gb_full && ./Run.neb_gb_full This test case requires a least 4 mpi threads. The number of mpi threads must also be a multiple of 4 and not more than 12. Not running test, exiting..... cd neb-testcases/neb_explicit && ./Run.neb_explicit This test case requires a least 4 mpi threads. The number of mpi threads must also be a multiple of 4 and not more than 12. Not running test, exiting..... cd ncsu && ./run-parallel.sh >>>>>>> doing 'abmd_ANALYSIS' >>>>>>> doing 'abmd_FLOODING' >>>>>>> doing 'abmd_UMBRELLA' >>>>>>> doing 'smd' cat: mdout: No such file or directory diffing save/mdout with mdout possible FAILURE: check mdout.dif ============================================================== cat: smd.txt: No such file or directory diffing save/smd.txt with smd.txt possible FAILURE: check smd.txt.dif ============================================================== >>>>>>> doing 'pmd' cat: mdout: No such file or directory diffing save/mdout with mdout possible FAILURE: check mdout.dif ============================================================== cat: pmd.txt: No such file or directory diffing save/pmd.txt with pmd.txt possible FAILURE: check pmd.txt.dif ============================================================== >>>>>>> doing 'smd2' [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion cat: mdout: No such file or directory diffing save/mdout with mdout possible FAILURE: check mdout.dif ============================================================== cat: work.txt: No such file or directory diffing save/work.txt with work.txt possible FAILURE: check work.txt.dif ============================================================== >>>>>>> doing 'bbmd' >>>>>>> doing 'abremd' >>>>>>> doing 'mwabmd' >>>>>>> doing 'premd' This test case (/home/user/amber12/test/ncsu/premd) requires a least 4 mpi threads. The number of mpi threads must also be a multiple of 4 and not more than 256. Not running test, exiting ..... export TESTsander=/home/user/amber12/bin/sander.LES.MPI; make -k test.sander.PIMD.partial make[2]: Entering directory `/home/user/amber12/test' cd PIMD/part_pimd_water && ./Run.pimd This test not set up for parallel cannot run in parallel with #residues < #pes cd PIMD/part_nmpimd_water && ./Run.nmpimd This test not set up for parallel cannot run in parallel with #residues < #pes cd PIMD/part_pimd_helium && ./Run.pimd [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pimd: Program error make[2]: [test.sander.PIMD.partial] Error 1 (ignored) cd PIMD/part_nmpimd_helium && ./Run.nmpimd [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmpimd: Program error make[2]: [test.sander.PIMD.partial] Error 1 (ignored) cd PIMD/part_nmpimd_ntp && ./Run.nmpimd [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmpimd: Program error make[2]: [test.sander.PIMD.partial] Error 1 (ignored) cd PIMD/part_pimd_spcfw && ./Run.pimd [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pimd: Program error make[2]: [test.sander.PIMD.partial] Error 1 (ignored) cd PIMD/part_cmd_water/equilib && ./Run.cmdyn [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.cmdyn: Program error make[2]: [test.sander.PIMD.partial] Error 1 (ignored) cd PIMD/part_cmd_water/start && ./Run.cmdyn [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.cmdyn: Program error make[2]: [test.sander.PIMD.partial] Error 1 (ignored) cd PIMD/part_cmd_water/restart && ./Run.cmdyn [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.cmdyn: Program error make[2]: [test.sander.PIMD.partial] Error 1 (ignored) cd PIMD/part_rpmd_water && ./Run.rpmd [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rpmd: Program error make[2]: [test.sander.PIMD.partial] Error 1 (ignored) cd ti_mass/pent_LES_PIMD && ./Run.pentadiene This test not set up for parallel cannot run in parallel with #residues < #pes make[2]: Leaving directory `/home/user/amber12/test' cd PIMD/full_cmd_water/equilib && ./Run.full_cmd This test case requires a least 4 mpi threads. The number of mpi threads must also be a multiple of 4 and not more than 32. Not running test, exiting..... cd PIMD/full_cmd_water/start && ./Run.full_cmd This test case requires a least 4 mpi threads. The number of mpi threads must also be a multiple of 4 and not more than 32. Not running test, exiting..... cd PIMD/full_cmd_water/restart && ./Run.full_cmd This test case requires a least 4 mpi threads. The number of mpi threads must also be a multiple of 4 and not more than 32. Not running test, exiting..... cd PIMD/full_nmpimd_water && ./Run.full_pimd This test case requires a least 4 mpi threads. The number of mpi threads must also be a multiple of 4 and not more than 32. Not running test, exiting..... cd PIMD/full_pimd_amoeba && ./Run.full_pimd_amoeba DO_PARALLEL set to mpirun -np 6 This test can be run only with four processes, exiting... ============================================================== cd PIMD/full_pimd_ln_water && ./Run.full_pimd_ln This test case requires a least 4 mpi threads. The number of mpi threads must also be a multiple of 4 and not more than 32. Not running test, exiting..... cd PIMD/full_pimd_nhc_water && ./Run.full_pimd_nhc This test case requires a least 4 mpi threads. The number of mpi threads must also be a multiple of 4 and not more than 32. Not running test, exiting..... cd PIMD/full_pimd_ntp_water && ./Run.full_pimd_ntp This test case requires a least 4 mpi threads. The number of mpi threads must also be a multiple of 4 and not more than 32. Not running test, exiting..... cd PIMD/full_rpmd_water && ./Run.full_rpmd This test case requires a least 4 mpi threads. The number of mpi threads must also be a multiple of 4 and not more than 32. Not running test, exiting..... cd ti_mass/pentadiene && ./Run.pentadiene DO_PARALLEL set to mpirun -np 6 This test can be run only with two processes, exiting... export TESTsander=/home/user/amber12/bin/sander.MPI; cd cnstph/implicit && ./Run.cnstph [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.cnstph: Program error make[1]: *** [test.sander.constph.MPI] Error 1 if [ -n "" ]; then \ export TESTsander='/home/user/amber12/bin/sander.MPI' \ && cd rism3d/ala && ./Run.ala; \ fi if [ -n "" ]; then \ export TESTsander='/home/user/amber12/bin/sander.MPI' \ && cd rism3d/ala && ./Run.ala.mdiis0; \ fi if [ -n "" ]; then \ export TESTsander='/home/user/amber12/bin/sander.MPI' \ && cd rism3d/ala && ./Run.ala.mdiis1; \ fi if [ -n "" ]; then \ export TESTsander='/home/user/amber12/bin/sander.MPI' \ && cd rism3d/ala && ./Run.ala.resize; \ fi if [ -n "" ]; then \ export TESTsander='/home/user/amber12/bin/sander.MPI' \ && cd rism3d/ala && ./Run.ala.dist; \ fi if [ -n "" ]; then \ export TESTsander='/home/user/amber12/bin/sander.MPI' \ && cd rism3d/ala && ./Run.ala.dist.xyzv; \ fi if [ -n "" ]; then \ export TESTsander='/home/user/amber12/bin/sander.MPI' \ && cd rism3d/ala && ./Run.ala.hnc; \ fi if [ -n "" ]; then \ export TESTsander='/home/user/amber12/bin/sander.MPI' \ && cd rism3d/ala && ./Run.ala.pse1; \ fi export TESTsander=/home/user/amber12/bin/sander.MPI; cd rxsgld_4rep && ./Run.rxsgld [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rxsgld: line 26: [: too many arguments [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rxsgld: Program error make[1]: [test.sander.RXSGLD] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/water && ./Run.water.min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.water.min: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/water && ./Run.water.md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.water.md: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/cyt && ./Run.cyt.min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.cyt.min: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/cyt && ./Run.cyt.md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.cyt.md: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/misc && ./Run.dist.type1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dist.type1: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/misc && ./Run.dist.type3 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dist.type3: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/misc && ./Run.dist.type4 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dist.type4: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/misc && ./Run.dist.type5 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dist.type5: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/misc && ./Run.angle.type1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.angle.type1: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/misc && ./Run.angle.type2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion I am NANO36 [proxy:0:0@NANO36] launch_procs (pm/pmiserv/pmip_cb.c:640): unable to change wdir to /home/user/amber12/test/crg_reloc/misc (No such file or directory) [proxy:0:0@NANO36] HYD_pmcd_pmip_control_cmd_cb (pm/pmiserv/pmip_cb.c:892): launch_procs returned error [proxy:0:0@NANO36] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [proxy:0:0@NANO36] main (pm/pmiserv/pmip.c:206): demux engine error waiting for event [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.angle.type2: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/misc && ./Run.angle.type3 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.angle.type3: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/misc && ./Run.angle.type4 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.angle.type4: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/misc && ./Run.mix [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.mix: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/1-4elec && ./Run.opt0 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.opt0: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='/home/user/amber12/bin/sander.MPI' && cd crg_reloc/1-4elec && ./Run.opt1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.opt1: Program error make[1]: [test.sander.crgreloc.MPI] Error 1 (ignored) export TESTsander='../../../bin/sander.MPI'; cd amd/dhfr_pme && ./Run.pme.amd1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pme.amd1: Program error make[1]: [test.parallel.sander.AMD] Error 1 (ignored) export TESTsander='../../../bin/sander.MPI'; cd amd/dhfr_pme && ./Run.pme.amd2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pme.amd2: Program error make[1]: [test.parallel.sander.AMD] Error 1 (ignored) export TESTsander='../../../bin/sander.MPI'; cd amd/dhfr_pme && ./Run.pme.amd3 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pme.amd3: Program error make[1]: [test.parallel.sander.AMD] Error 1 (ignored) export TESTsander='../../../bin/sander.MPI'; cd amd/gact_ips && ./Run.ips.amd1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ips.amd1: Program error make[1]: [test.parallel.sander.AMD] Error 1 (ignored) export TESTsander='../../../bin/sander.MPI'; cd amd/gact_ips && ./Run.ips.amd2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ips.amd2: Program error make[1]: [test.parallel.sander.AMD] Error 1 (ignored) export TESTsander='../../../bin/sander.MPI'; cd amd/gact_ips && ./Run.ips.amd3 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ips.amd3: Program error make[1]: [test.parallel.sander.AMD] Error 1 (ignored) export TESTsander='../../../bin/sander.MPI'; cd amd/rna_gb && ./Run.gb.amd1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gb.amd1: Program error make[1]: [test.parallel.sander.AMD] Error 1 (ignored) export TESTsander='../../../bin/sander.MPI'; cd amd/rna_gb && ./Run.gb.amd2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gb.amd2: Program error make[1]: [test.parallel.sander.AMD] Error 1 (ignored) export TESTsander='../../../bin/sander.MPI'; cd amd/rna_gb && ./Run.gb.amd3 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gb.amd3: Program error make[1]: [test.parallel.sander.AMD] Error 1 (ignored) export TESTsander=/home/user/amber12/bin/sander.MPI; make -k test.sander.QMMM make[2]: Entering directory `/home/user/amber12/test' cd qmmm2/xcrd_build_test/ && ./Run.oct_nma_imaged [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.oct_nma_imaged: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/xcrd_build_test/ && ./Run.oct_nma_noimage [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.oct_nma_noimage: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/xcrd_build_test/ && ./Run.ortho_qmewald0 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ortho_qmewald0: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/xcrd_build_test/ && ./Run.truncoct_qmewald0 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.truncoct_qmewald0: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin_2 && ./Run.crambin [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin_2 && ./Run.crambin_md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin_md: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin_2 && ./Run.crambin_md_calc_mulliken [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin_md_calc_mulliken: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin_2 && ./Run.crambin_md_qmgb2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin_md_qmgb2: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin_2 && ./Run.crambin_md_qmgb2_alpb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin_md_qmgb2_alpb: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin_2 && ./Run.crambin_md_qmgb2_aq1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin_md_qmgb2_aq1: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin_2 && ./Run.crambin_md_qmgb2_aq2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin_md_qmgb2_aq2: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin_2 && ./Run.crambin_md_qmgb2_saltcon [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin_md_qmgb2_saltcon: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_internal [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_internal: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_dspev [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_dspev: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_dspevd [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_dspevd: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_dspevx [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_dspevx: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_dsyev [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_dsyev: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_dsyevd [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_dsyevd: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_dsyevr [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_dsyevr: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_test_diagonalizers && ./Run.1NLN_auto [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_auto: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_min: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_MD_ntb1: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_aq1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_MD_ntb1_aq1: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_aq2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_MD_ntb1_aq2: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_mmcorr [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_MD_ntb1_mmcorr: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_qmewald2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_MD_ntb1_qmewald2: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_MD_ntb2: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_aq2_NUMER_DERIV [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_MD_ntb1_aq2_NUMER_DERIV: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_lnk_dis_neg [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_MD_ntb1_lnk_dis_neg: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/1NLN_periodic_lnk_atoms && ./Run.1NLN_MD_ntb1_lnk_method2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_MD_ntb1_lnk_method2: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.notimaged [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.notimaged: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.notimaged_md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.notimaged_md: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.notimaged_md_pme [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.notimaged_md_pme: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.notimaged_md_pme_qmewald [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.notimaged_md_pme_qmewald: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.notimaged_md_pme_qmewald_lowmem [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.notimaged_md_pme_qmewald_lowmem: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.imaged [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.imaged: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.imaged_md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.imaged_md: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.img_center [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.img_center: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.img_center_md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.img_center_md: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_periodic && ./Run.img_center_bigqmcut_md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.img_center_bigqmcut_md: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin && ./Run.crambin [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin && ./Run.crambin_md_hot_start [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin_md_hot_start: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin && ./Run.crambin_md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin_md: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/tip3p_cap && ./Run.tip3p_cap [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tip3p_cap: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/tip3p_cap && ./Run.tip3p_cap_md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tip3p_cap_md: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/tip3p_cap && ./Run.tip3p_cap_md.shake [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tip3p_cap_md.shake: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/tip3p_cap && ./Run.tip3p_cap_md.shake_qmshakeoff [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tip3p_cap_md.shake_qmshakeoff: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_qmcut && ./Run.MG_QM_water_MM [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.MG_QM_water_MM: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_qmcut && ./Run.MG_QM_water_MM_MD [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.MG_QM_water_MM_MD: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_qmcut_lowmem && ./Run.MG_QM_water_MM_MD [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.MG_QM_water_MM_MD: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_qmcut_ADDMM && ./Run.MG_QM_water_MM [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.MG_QM_water_MM: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MG_QM_water_MM_AM1_qmcut_ADDMM && ./Run.MG_QM_water_MM_MD [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.MG_QM_water_MM_MD: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/variable_solvent && ./Run.mg_periodic_vsolv_wat [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.mg_periodic_vsolv_wat: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/variable_solvent && ./Run.1NLN_MD_ntb1_vsolv [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.1NLN_MD_ntb1_vsolv: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/PM3-MMX && ./Run.crambin_md_pm3mmx [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin_md_pm3mmx: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/PM3-MMX2 && ./Run.crambin_md_pm3mmx2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin_md_pm3mmx2: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin_PM6 && ./Run.crambin [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/crambin_PM6 && ./Run.crambin_md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.crambin_md: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/PM3-MAIS && ./Run.zundel [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.zundel: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/PM3-MAIS && ./Run.hcl_wat [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.hcl_wat: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) cd qmmm2/MechEm_nma-spcfwbox && ./Run.MechEm_PDDGPM3 diffing mdout.MechEm_PDDGPM3.save with mdout.MechEm_PDDGPM3 PASSED ============================================================== cd qmmm2/qmmm_switching_func && ./Run.nma_md_switching [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nma_md_switching: Program error make[2]: [test.sander.QMMM] Error 1 (ignored) make[2]: Leaving directory `/home/user/amber12/test' export TESTsander=/home/user/amber12/bin/sander.MPI; make -k test.sander.DFTB make[2]: Entering directory `/home/user/amber12/test' cd qmmm_DFTB/crambin_DFTB && ./Run.crambin DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/crambin_DFTB && ./Run.crambin_md_hot_start DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/crambin_DFTB && ./Run.crambin_md DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md_calc_mulliken DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md_qmgb2 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md_qmgb2_alpb DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md_qmgb2_aq1 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md_qmgb2_aq2 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/crambin_2_DFTB && ./Run.crambin_md_qmgb2_saltcon DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_ewald_ntb1 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_ewald_ntb1_link_atoms DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_ewald_ntb1_qmewald2 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_ewald_ntb2 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb1 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb2 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb2_link_atoms DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb2_link_atoms_aq1 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb2_link_atoms_aq2 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb2_qmewald2 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/aladip_tip3p_ewaldpme && ./Run.aladip_pme_ntb2_telec DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/MG_QM_water_MM_DFTB_qmcut && ./Run.MG_QM_water_MM DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/MG_QM_water_MM_DFTB_qmcut && ./Run.MG_QM_water_MM_MD DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.notimaged DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.notimaged_md DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.notimaged_md_pme DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.notimaged_md_pme_qmewald DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.imaged DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.imaged_md DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.img_center DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.img_center_md DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/MG_QM_water_MM_DFTB_periodic && ./Run.img_center_bigqmcut_md DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/MG_QM_water_MM_DFTB_qmcut_lowmem && ./Run.MG_QM_water_MM_MD DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/tip3p_cap_DFTB && ./Run.tip3p_cap DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/tip3p_cap_DFTB && ./Run.tip3p_cap_md DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/tip3p_cap_DFTB && ./Run.tip3p_cap_md.shake DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/tip3p_cap_DFTB && ./Run.tip3p_cap_md.shake_qmshakeoff DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_min DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1_lnk_dis_neg DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1_lnk_method2 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1_aq1 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1_aq1_disp DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1_aq2 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb1_qmewald2 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/1NLN_periodic_lnk_atoms_DFTB && ./Run.1NLN_MD_ntb2 DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/3rd-order/ala8 && ./Run.ala8_PA DFTB SLKO files not found - Skipping Test... cd qmmm_DFTB/3rd-order/ala8 && ./Run.ala8_PR DFTB SLKO files not found - Skipping Test... cd qmmm2/MechEm_nma-spcfwbox && ./Run.MechEm_DFTB DFTB SLKO files not found - Skipping Test... make[2]: Leaving directory `/home/user/amber12/test' export TESTsander=/home/user/amber12/bin/sander.MPI; cd qmmm_EXTERN/pure_QM_MD_ADF_PIMD && ./Run.h2o.blyp_sz.pimd ADF dftb program not installed - Skipping Test... export TESTsander=/home/user/amber12/bin/sander.MPI; cd qmmm_EXTERN/pure_QM_MD_ADF_REMD && ./Run.h2o.blyp_sz.remd ADF not installed - Skipping Test... Check your ADF installation and make sure that the ADF executable is called adf.exe export TESTsander=/home/user/amber12/bin/sander.MPI; cd qmmm_EXTERN/pure_QM_MD_GAMESS_PIMD && ./Run.h2o.hf_sto-3g.pimd GAMESS not installed - Skipping Test... Check your GAMESS installation and make sure that the GAMESS executable is called rungms export TESTsander=/home/user/amber12/bin/sander.MPI; cd qmmm_EXTERN/pure_QM_MD_GAMESS_REMD && ./Run.h2o.hf_sto-3g.remd GAMESS not installed - Skipping Test... Check your GAMESS installation and make sure that the GAMESS executable is called rungms export TESTsander=/home/user/amber12/bin/sander.MPI; cd qmmm_EXTERN/pure_QM_MD_GAUSSIAN_PIMD && ./Run.h2o.hf_sto-3g.pimd GAUSSIAN not installed - Skipping Test... Check your GAUSSIAN installation and make sure that the GAUSSIAN executable is called g09 or g03 export TESTsander=/home/user/amber12/bin/sander.MPI; cd qmmm_EXTERN/pure_QM_MD_GAUSSIAN_REMD && ./Run.h2o.hf_sto-3g.remd GAUSSIAN not installed - Skipping Test... Check your GAUSSIAN installation and make sure that the GAUSSIAN executable is called g09 or g03 export TESTsander=/home/user/amber12/bin/sander.MPI; cd qmmm_EXTERN/pure_QM_MD_TeraChem_PIMD && ./Run.h2o.hf_sto-3g.pimd TeraChem not installed - Skipping Test... Check your TeraChem installation and make sure that the TeraChem executable is called terachem export TESTsander=/home/user/amber12/bin/sander.MPI; cd qmmm_EXTERN/pure_QM_MD_TeraChem_PIMD && ./Run.h2o.hf_sto-3g.pimd mpi TeraChem not installed - Skipping Test... Check your TeraChem installation and make sure that the TeraChem executable is called terachem export TESTsander=/home/user/amber12/bin/sander.MPI; cd qmmm_EXTERN/pure_QM_MD_TeraChem_PIMD && ./Run.h2o.hf_sto-3g.pimd mpi TeraChem not installed - Skipping Test... Check your TeraChem installation and make sure that the TeraChem executable is called terachem export TESTsander=/home/user/amber12/bin/sander.MPI; cd qmmm_EXTERN/pure_QM_MD_TeraChem_REMD && ./Run.h2o.hf_sto-3g.remd /bin/sh: ./Run.h2o.hf_sto-3g.remd: No such file or directory make[1]: *** [test.sander.EXTERN.MPI] Error 127 cd evb/malon_bond_umb_GAFF && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_bond_umb_GAFF_MORSIFY && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_bond_umb_GAFF_MORSIFY_XVDW && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY_nmpimd_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY_pimd_ld_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY_pimd_nhc_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY_XVDW && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY_XVDW_EXP-XCH && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY_XVDW_EXP-XCH_pimd_ld_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY_XVDW_EXP-XCH_pimd_nhc_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY_XVDW_EXP-XCH_nmpimd_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY_XVDW_GAUSS-XCH && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY_XVDW_GAUSS-XCH_pimd_ld_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY_XVDW_GAUSS-XCH_pimd_nhc_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_GAFF_MORSIFY_XVDW_GAUSS-XCH_nmpimd_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_emap_GAFF_MORSIFY && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_emap_GAFF_MORSIFY_XVDW && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_bond_umb_dg_UFF_3DG && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_bond_umb_dg_UFF_3DG_nmpimd_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_bond_umb_dg_UFF_3DG_pimd_ld_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_bond_umb_dg_UFF_3DG_pimd_nhc_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_bond_umb_dg_UFF_3DG_pimd_nhc_full_TI-MASS && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbond_umb_dg_UFF_3DG_pimd_nhc_full_TI-MASS && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_dg_UFF_3DG_qi_full_2D-PMF && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/malon_dbonds_umb_dg_UFF_3DG_qi_full_corrF && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/poh_dbonds_umb_dg_UFF_3DG && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/poh_dbonds_umb_dg_UFF_9DG && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/poh_dbonds_umb_dg_UFF_9DG_pimd_ld_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/poh_dbonds_umb_dg_UFF_9DG_pimd_nhc_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/poh_dbonds_umb_dg_UFF_9DG_nmpimd_full && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ cd evb/poh_dbonds_umb_dg_UFF_9DG_nmpimd_full_TST-freqf && ./Run.evb DO_PARALLEL set to mpirun -np 6 too many processors for this test, exiting ============================================================ export TESTsander='../../bin/pmemd.MPI'; cd 4096wat && ./Run.pure_wat [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pure_wat: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd 4096wat && ./Run.pure_wat_nmr_temp_reg [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pure_wat_nmr_temp_reg: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd 4096wat && ./Run.vrand [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.vrand: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd 4096wat_oct && ./Run.pure_wat_oct [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pure_wat_oct: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd alp && ./Run.alp [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.alp: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd cytosine && ./Run.cytosine [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.cytosine: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd dhfr && ./Run.dhfr [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd dhfr && ./Run.dhfr.min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr.min: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd dhfr && ./Run.dhfr.noshake [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr.noshake: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd variable_14 && ./Run.variable_14_ntb1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.variable_14_ntb1: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd trx && ./Run.trx [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trx: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd trx && ./Run.trx.cpln.pmemd [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trx.cpln.pmemd: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gbrna: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gbrna.min: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb_rna && ./Run.gbrna.ln [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gbrna.ln: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd circ_dna && ./Run.circdna [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.circdna: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb2_trx && ./Run.trxox.nogbsa [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trxox.nogbsa: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb7_trx && ./Run.trxox_md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trxox_md: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb8_trx && ./Run.trxox [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trxox: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb8_trx && ./Run.trxox_md && ./Run.trxox_md prmtop_an [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trxox_md: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd alpb_trx && ./Run.trxox.nogbsa [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.trxox.nogbsa: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gb1_cox2 && ./Run.cox2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.cox2: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gbsa_xfin && ./Run.gbsa [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gbsa: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip4p && ./Run.tip4p [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tip4p: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip4p && ./Run.tip4p_nve [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tip4p_nve: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip5p && ./Run.tip5p [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tip5p: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd tip5p && ./Run.tip5p_nve [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.tip5p_nve: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr && ./Run.dhfr_charmm.min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr_charmm.min: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr && ./Run.dhfr_charmm.md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr_charmm.md: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap && ./Run.dhfr_charmm.md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr_charmm.md: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm_noshake.min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr_cmap_pbc_charmm_noshake.min: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm_noshake.md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr_cmap_pbc_charmm_noshake.md: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm.min [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr_cmap_pbc_charmm.min: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd chamber/md_engine/dhfr_cmap_pbc && ./Run.dhfr_cmap_pbc_charmm.md [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dhfr_cmap_pbc_charmm.md: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI' && cd amd/dhfr_pme && ./Run.pme.amd1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pme.amd1: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI' && cd amd/dhfr_pme && ./Run.pme.amd2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pme.amd2: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI' && cd amd/dhfr_pme && ./Run.pme.amd3 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.pme.amd3: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI' && cd amd/gact_ips && ./Run.ips.amd1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ips.amd1: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI' && cd amd/gact_ips && ./Run.ips.amd2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ips.amd2: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI' && cd amd/gact_ips && ./Run.ips.amd3 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ips.amd3: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI' && cd amd/rna_gb && ./Run.gb.amd1 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gb.amd1: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI' && cd amd/rna_gb && ./Run.gb.amd2 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gb.amd2: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../bin/pmemd.MPI' && cd amd/rna_gb && ./Run.gb.amd3 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.gb.amd3: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd gact_ips && ./Run.ips [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.ips: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd csurften && ./Run.csurften_z-dir [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.csurften_z-dir: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd csurften && ./Run.csurften_z-dir_npt_3 [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.csurften_z-dir_npt_3: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../../../bin/pmemd.MPI'; cd nmropt && make pmemd_compat make[2]: Entering directory `/home/user/amber12/test/nmropt' cd gb/angle && ./Run.nmropt_1angle_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1angle_gb: Program error make[2]: [pmemd_compat_gb] Error 1 (ignored) cd gb/distance && ./Run.dist_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dist_gb: Program error make[2]: [pmemd_compat_gb] Error 1 (ignored) cd gb/distance_COM && ./Run.distCOM_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.distCOM_gb: Program error make[2]: [pmemd_compat_gb] Error 1 (ignored) cd gb/jar_distance && ./Run.jar_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_gb: Program error make[2]: [pmemd_compat_gb] Error 1 (ignored) cd gb/jar_distance_COM && ./Run.jar_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_gb: Program error make[2]: [pmemd_compat_gb] Error 1 (ignored) cd gb/jar_torsion && ./Run.jar_torsion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_torsion: Program error make[2]: [pmemd_compat_gb] Error 1 (ignored) cd gb/nmropt_1_torsion && ./Run.nmropt_1_torsion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1_torsion: Program error make[2]: [pmemd_compat_gb] Error 1 (ignored) cd gb/tautp && ./Run.nmropt_1tautp_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1tautp_gb: Program error make[2]: [pmemd_compat_gb] Error 1 (ignored) cd gb/temp && ./Run.nmropt_1temp_gb [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1temp_gb: Program error make[2]: [pmemd_compat_gb] Error 1 (ignored) cd pme/angle && ./Run.nmropt_1angle_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1angle_pbc: Program error make[2]: [pmemd_compat_pme] Error 1 (ignored) cd pme/distance && ./Run.dist_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.dist_pbc: Program error make[2]: [pmemd_compat_pme] Error 1 (ignored) cd pme/distance_COM && ./Run.distCOM_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.distCOM_pbc: Program error make[2]: [pmemd_compat_pme] Error 1 (ignored) cd pme/jar_torsion && ./Run.jar_torsion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_torsion: Program error make[2]: [pmemd_compat_pme] Error 1 (ignored) cd pme/jar_distance && ./Run.jar_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_pbc: Program error make[2]: [pmemd_compat_pme] Error 1 (ignored) cd pme/jar_distance_COM && ./Run.jar_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.jar_pbc: Program error make[2]: [pmemd_compat_pme] Error 1 (ignored) cd pme/nmropt_1_torsion && ./Run.nmropt_1_torsion [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1_torsion: Program error make[2]: [pmemd_compat_pme] Error 1 (ignored) cd pme/tautp && ./Run.nmropt_1tautp_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1tautp_pbc: Program error make[2]: [pmemd_compat_pme] Error 1 (ignored) cd pme/temp && ./Run.nmropt_1temp_pbc [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.nmropt_1temp_pbc: Program error make[2]: [pmemd_compat_pme] Error 1 (ignored) make[2]: Leaving directory `/home/user/amber12/test/nmropt' export TESTsander='../../bin/pmemd.MPI'; cd rem_gb_2rep && ./Run.rem [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rem: line 22: [: too many arguments [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rem: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd rem_gb_4rep && ./Run.rem [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rem: line 28: [: too many arguments [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rem: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) export TESTsander='../../bin/pmemd.MPI'; cd rem_wat && ./Run.rem [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rem: line 22: [: -lt: unary operator expected [mpiexec@NANO35] control_cb (pm/pmiserv/pmiserv_cb.c:200): assert (!closed) failed [mpiexec@NANO35] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status [mpiexec@NANO35] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event [mpiexec@NANO35] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion ./Run.rem: Program error make[1]: [test.parallel.pmemd] Error 1 (ignored) Finished parallel test suite for Amber 12 at Sun Nov 30 17:19:13 IST 2014. Some tests require 4 threads to run, while some will not run with more than 2. Please run further parallel tests with the appropriate number of processors. See /home/user/amber12/test/README. make[1]: Target `test.parallel2' not remade because of errors. make[1]: Leaving directory `/home/user/amber12/test' 6 file comparisons passed 15 file comparisons failed 0 tests experienced an error Test log file saved as /home/user/amber12/logs/test_amber_parallel/2014-11-30_17-18-05.log Test diffs file saved as /home/user/amber12/logs/test_amber_parallel/2014-11-30_17-18-05.diff