Re: [AMBER] PBSA error

From: Kshatresh Dutta Dubey <kshatresh.gmail.com>
Date: Thu, 20 Nov 2014 22:45:49 +0200

Thanks David and Jason for your suggestions.

Regards
Kshatresh

On Thu, Nov 20, 2014 at 10:42 PM, David A Case <case.biomaps.rutgers.edu>
wrote:

> > On Thu, Nov 20, 2014, Kshatresh Dutta Dubey wrote:
> > >
> > > I am using amber 14 for pbsa program. When I am trying to run the pbsa
> with
> > > :
> > > pbsa -O -i pbsa.in -o pbsa.out -p ../dimer-sb-wat.prmtop -c
> > > dimer-SB-run1.rst &
> > >
> > > It is showing error:
> > > Program received signal SIGSEGV: Segmentation fault - invalid memory
> > > reference.
> >
> > > segmentation fault. I am using netcdf format of rst file...
> >
> > Try converting the rst file to the older (formatted) format: in cpptraj
> >
> > trajin dimer-SB-run1.rst
> > trajin dimer-SB-run1.rst7 restart
> ^^^^^^^ <= trajout here, not trajin.....
>
> ...dac
>
>
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Received on Thu Nov 20 2014 - 13:00:05 PST
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