Hi Jason and David,
I re-ran the pbsa using old styled inpcrd, but unfortunately I am getting
same error.
Regards
Kshatresh
On Thu, Nov 20, 2014 at 10:45 PM, Kshatresh Dutta Dubey <kshatresh.gmail.com
> wrote:
> Thanks David and Jason for your suggestions.
>
> Regards
> Kshatresh
>
> On Thu, Nov 20, 2014 at 10:42 PM, David A Case <case.biomaps.rutgers.edu>
> wrote:
>
>> > On Thu, Nov 20, 2014, Kshatresh Dutta Dubey wrote:
>> > >
>> > > I am using amber 14 for pbsa program. When I am trying to run the
>> pbsa with
>> > > :
>> > > pbsa -O -i pbsa.in -o pbsa.out -p ../dimer-sb-wat.prmtop -c
>> > > dimer-SB-run1.rst &
>> > >
>> > > It is showing error:
>> > > Program received signal SIGSEGV: Segmentation fault - invalid memory
>> > > reference.
>> >
>> > > segmentation fault. I am using netcdf format of rst file...
>> >
>> > Try converting the rst file to the older (formatted) format: in cpptraj
>> >
>> > trajin dimer-SB-run1.rst
>> > trajin dimer-SB-run1.rst7 restart
>> ^^^^^^^ <= trajout here, not trajin.....
>>
>> ...dac
>>
>>
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>
--
With best regards
************************************************************************************************
Kshatresh Dutta Dubey
Post Doctoral Researcher,
Lise Meitner Center for Computational Quantum Chemistry
Hebrew University of Jerusalem Israel
Jerusalem, Israel
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Received on Thu Nov 20 2014 - 13:00:05 PST
