[AMBER] bond distances in amber

From: Mary Varughese <maryvj1985.gmail.com>
Date: Fri, 7 Nov 2014 15:17:53 +0530


Usually C-N bond distance is ~1.47 angstroms.
In DNA and RNA, the A nucleotide has C-N (C1'-N9) distance given as
1.52 angstrom (from leap). if in a struture this distance is 1.45
angstrom. does amber force it to 1.52 and would it cause any
instabilty to the system? is this distance difference significant?

thanking you


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Received on Fri Nov 07 2014 - 02:00:02 PST
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