[AMBER] cyclic peptide side chains

From: Maria Diaz <mddiazhdez.yahoo.com>
Date: Fri, 21 Nov 2014 10:43:50 +0000


we want to carry out MD simulations for a cyclic peptide using amber. The cyclic peptide we are currently study has a bond between (modified) side chains of two amino acids (i.e. N-terminus or first amino acid and sixth residue). How can I parametrized the modified residues?
I would appreciate very much any help and suggestion
Thank you very much for your consideration

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Received on Fri Nov 21 2014 - 03:00:03 PST
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