Hi,
You can try visualizing 3d histogram output by writing in a density
format like OpenDX (just change the output filename extension to
'.dx') and using a program like VMD.
Hope this helps,
-Dan
On Thu, Nov 6, 2014 at 5:54 AM, CHAMI F. <fatima.chami.durham.ac.uk> wrote:
> Dear Amber user,
>
> is there a way to represent a 3D histogram from output of hist in cpptraj
>
> hist phi1 phi2 phi3 min -180 max 180 bins 72 out hist_id_20.gnu
>
>
> 2D histogram is fine in gnuplot using: splot "-" with pm3d title "hist.gnu"
>
> many thanks
> fc
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Nov 06 2014 - 10:00:02 PST
