On Fri, Nov 21, 2014, m13654940810 wrote:
> I want to use NAB to build a single nucleotide with capped
> 5'(phosphate)，I wonder how to do it?
See note 6 in Section 3.1 of the Amber14 Reference Manual. Note that the
deprotonated phosphate version (2- charge) is not in the standard library, so
you would have to treat this as a new residue, probably using R.E.D. to assist
in getting the charges.
...good luck...dac
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Received on Fri Nov 21 2014 - 05:00:02 PST
