[AMBER] Metal parameterization

From: sailu <sai.ktp.gmail.com>
Date: Sat, 29 Nov 2014 10:20:46 +0530

Dear Amber users;

I have a protein with two metal ions: one is Zinc (ZN) and other one is
Nickle (Ni). I want parameterise those metal ions to start my
simulation using Amber modules. The ZN is coordinated with four Cys
residues and Ni is coordinated with two residues including His and Glu. I
am new to amber and I don't know how to parameterise these metals. I
really appreciate you if someone helps in this regards.


*Sarvagalla sailu,*
*Centre for Bioinformatics,*
*School of Life Sciences,*
*Pondicherry University**,*
*Puducherry - 605014**,*
*Mobile: +91-9963202788,**+91-9943923258*
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Received on Fri Nov 28 2014 - 21:00:02 PST
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