On Thu, Nov 20, 2014 at 1:10 PM, Kshatresh Dutta Dubey <kshatresh.gmail.com>
wrote:
> Dear Users,
>
> I am using amber 14 for pbsa program. When I am trying to run the pbsa with
> :
> pbsa -O -i pbsa.in -o pbsa.out -p ../dimer-sb-wat.prmtop -c
> dimer-SB-run1.rst &
>
> It is showing error:
> Program received signal SIGSEGV: Segmentation fault - invalid memory
> reference.
>
> Backtrace for this error:
> #0 0x2B776A0A34C7
> #1 0x2B776A0A3B0E
> #2 0x2B776AB3463F
> #3 0x2B776A169990
> #4 0x2B776A16A4A8
> #5 0x2B776A16E2DC
> #6 0x4C3139 in rdparm2_
> #7 0x40574F in pbsa_
> ......
> segmentation fault. I am using netcdf format of rst file, while my input
>
Try using an ASCII format coordinate file. I don't know that PBSA
supports NetCDF restart files.
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Thu Nov 20 2014 - 12:30:04 PST
