Re: [AMBER] How to restrain atoms

From: David A Case <case.biomaps.rutgers.edu>
Date: Wed, 26 Nov 2014 08:11:30 -0500

On Wed, Nov 26, 2014, Akihiro Yamane wrote:

> Would someone let me know how to restrain atoms during optimization?
> I want to depict Ramachandran plot of disaccharide in vacuum under fixing
> atoms condition.

What you did looks fine. If you want to make sure that certain atoms don't
move (even by a tiny amount), use the ibelly option rather than the ntr
option.

...good luck...dac


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Received on Wed Nov 26 2014 - 05:30:02 PST
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