Hi,
On Tue, Nov 11, 2014 at 12:58 PM, Sylvester Tumusiime <stumusii.uno.edu> wrote:
> One of the attempts i tried worked.
This makes me think this is more likely a problem with your local
system than with cpptraj. The top two hits from google-searching your
error message appear highly relevant.
> 0: [autoimage]
> 1: [center :1-54 mass origin]
> 2: [image origin center familiar]
Why are you centering and imaging after autoimaging? That seems
redundant to me. Does it not work if you just 'autoimage'?
-Dan
> ----- prod3.netcdf (1-100, 1) -----
> 0% 10%
> 61,3 Bot
> ________________________________________
> From: Daniel Roe [daniel.r.roe.gmail.com]
> Sent: Tuesday, November 11, 2014 1:46 PM
> To: AMBER Mailing List
> Subject: Re: [AMBER] cpptraj
>
> Hi,
>
> What version of cpptraj are you using? Do all test cases pass?
>
> -Dan
>
> On Tue, Nov 11, 2014 at 12:30 PM, Sylvester Tumusiime <stumusii.uno.edu> wrote:
>>
>> Hi Amber Users,
>> I tried to run the following cpptraj command on prompt: cpptraj
>> solvated.prmtop <ptraj_proof.in > ptraj_proof2.out
>> and i got this error:
>>
>> cpptraj: posixio.c:284: px_pgin: Assertion `*posp == ((off_t)(-1)) || *posp
>> == lseek(nciop->fd, 0, 1)' failed.
>>
>> Has anyone ever come across this?
>>
>> Sylvester
>> _______________________________________________
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>> http://lists.ambermd.org/mailman/listinfo/amber
>
>
>
> --
> -------------------------
> Daniel R. Roe, PhD
> Department of Medicinal Chemistry
> University of Utah
> 30 South 2000 East, Room 307
> Salt Lake City, UT 84112-5820
> http://home.chpc.utah.edu/~cheatham/
> (801) 587-9652
> (801) 585-6208 (Fax)
>
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>
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Tue Nov 11 2014 - 12:30:02 PST
