Amber Archive Sep 2017: by subject

[AMBER] .com file creation
- Rana Rehan Khalid (Fri Sep 22 2017 - 14:34:32 PDT)
- pancham lal Gupta (Tue Sep 19 2017 - 17:30:49 PDT)
- Rana Rehan Khalid (Tue Sep 19 2017 - 13:21:41 PDT)
[AMBER] .crd file format error
- Daniel Roe (Tue Sep 05 2017 - 08:46:41 PDT)
- Thakur, Abhishek (Tue Sep 05 2017 - 08:37:15 PDT)
[AMBER] A query about coordinate saving frequency for solvation entropy calculation using GIST
- SHAILESH KUMAR (Tue Sep 26 2017 - 00:37:13 PDT)
[AMBER] ACE and NME capping protein is essential for protein simulation
- jacky zhao (Fri Sep 01 2017 - 08:55:56 PDT)
- jacky zhao (Fri Sep 01 2017 - 08:50:19 PDT)
- Carlos Simmerling (Fri Sep 01 2017 - 06:29:04 PDT)
- David A Case (Fri Sep 01 2017 - 05:42:20 PDT)
- jacky zhao (Fri Sep 01 2017 - 03:30:57 PDT)
[AMBER] Air-water interface
- Bill Ross (Wed Sep 27 2017 - 09:58:25 PDT)
- jesus berlanga (Wed Sep 27 2017 - 09:44:32 PDT)
- Bill Ross (Tue Sep 26 2017 - 23:03:46 PDT)
- jesus berlanga (Tue Sep 26 2017 - 22:58:12 PDT)
[AMBER] Amber16 archive corrupted?
- Casalini Tommaso (Wed Sep 13 2017 - 04:07:57 PDT)
- Elvis Martis (Wed Sep 13 2017 - 04:05:47 PDT)
- Casalini Tommaso (Wed Sep 13 2017 - 03:30:01 PDT)
[AMBER] Amber16 electric field parameters
- Pengfei Li (Sat Sep 23 2017 - 15:35:06 PDT)
- Alessandro Mariani (Thu Sep 21 2017 - 02:22:33 PDT)
[AMBER] amberlite p38 tutorial: Failure of final step of "pymdpbsa" in amberlite
- Bartberger, Michael (Sat Sep 09 2017 - 14:57:41 PDT)
- David A Case (Sun Sep 03 2017 - 18:27:21 PDT)
- Bartberger, Michael (Sun Sep 03 2017 - 09:25:31 PDT)
[AMBER] AmberTools 17 incomplete compilation
- Hai Nguyen (Mon Sep 18 2017 - 15:19:58 PDT)
- Daniel Roe (Mon Sep 18 2017 - 05:41:02 PDT)
- D L S Dinuka (Mon Sep 18 2017 - 05:31:04 PDT)
[AMBER] ambertools install issue
- Hai Nguyen (Tue Sep 19 2017 - 11:07:04 PDT)
- Eric Smoll (Tue Sep 19 2017 - 10:50:30 PDT)
[AMBER] ambertools install issue (Eric Smoll)
- David A Case (Wed Sep 20 2017 - 08:21:49 PDT)
- Hai Nguyen (Tue Sep 19 2017 - 14:11:12 PDT)
- Eric Smoll (Tue Sep 19 2017 - 12:38:21 PDT)
[AMBER] An equilibration of the membrane protein prepared by charmm-gui
- ABEL Stephane (Fri Sep 01 2017 - 07:23:54 PDT)
- James Starlight (Fri Sep 01 2017 - 06:08:35 PDT)
- ABEL Stephane (Fri Sep 01 2017 - 02:23:11 PDT)
- James Starlight (Fri Sep 01 2017 - 00:52:56 PDT)
[AMBER] analysizing the trajectory for water interaction
- Thakur, Abhishek (Mon Sep 25 2017 - 15:31:00 PDT)
[AMBER] angle between two subdomains
- Daniel Roe (Tue Sep 19 2017 - 07:44:44 PDT)
- Sowmya Indrakumar (Tue Sep 19 2017 - 06:44:11 PDT)
[AMBER] Antechamber
- Rana Rehan Khalid (Thu Sep 21 2017 - 13:57:20 PDT)
- David A Case (Thu Sep 21 2017 - 13:20:32 PDT)
- Rana Rehan Khalid (Wed Sep 20 2017 - 11:22:23 PDT)
- Robin Betz (Wed Sep 20 2017 - 11:14:07 PDT)
- Bill Ross (Wed Sep 20 2017 - 11:07:26 PDT)
- Rana Rehan Khalid (Wed Sep 20 2017 - 11:02:02 PDT)
- Rana Rehan Khalid (Wed Sep 20 2017 - 09:57:09 PDT)
- Rana Rehan Khalid (Wed Sep 20 2017 - 09:46:19 PDT)
[AMBER] Antechamber error
- Rana Rehan Khalid (Thu Sep 21 2017 - 09:03:28 PDT)
- Scott Brozell (Thu Sep 21 2017 - 08:59:19 PDT)
- Elvis Martis (Thu Sep 21 2017 - 07:39:14 PDT)
- Rana Rehan Khalid (Thu Sep 21 2017 - 07:34:08 PDT)
[AMBER] Antechamber RESP calculation error
- Pengfei Li (Sat Sep 23 2017 - 15:31:57 PDT)
- Rana Rehan Khalid (Sat Sep 23 2017 - 14:36:21 PDT)
- Pengfei Li (Sat Sep 23 2017 - 14:24:35 PDT)
- Rana Rehan Khalid (Sat Sep 23 2017 - 10:05:26 PDT)
[AMBER] Atom does not have file type -reg.
- Aashish Bhatt (Tue Sep 12 2017 - 08:51:37 PDT)
- Jeyaram R A (Tue Sep 12 2017 - 08:34:02 PDT)
- Aashish Bhatt (Tue Sep 12 2017 - 08:09:33 PDT)
- Jeyaram R A (Tue Sep 12 2017 - 07:21:01 PDT)
- David A Case (Tue Sep 12 2017 - 04:21:04 PDT)
- Bill Ross (Mon Sep 11 2017 - 08:07:51 PDT)
- Jeyaram R A (Mon Sep 11 2017 - 08:04:39 PDT)
[AMBER] Avoid pH Titration of LYS and TYR
- R zu (Thu Sep 28 2017 - 11:26:45 PDT)
- Adrian Roitberg (Wed Sep 27 2017 - 12:48:29 PDT)
- R zu (Wed Sep 27 2017 - 12:17:21 PDT)
[AMBER] barostat with large coupling constant
- R zu (Thu Sep 28 2017 - 18:14:57 PDT)
[AMBER] Binding Free Energy Calculation in Ionic Liquid
- David A Case (Mon Sep 04 2017 - 05:39:56 PDT)
- Bill Ross (Sun Sep 03 2017 - 22:17:51 PDT)
- Debasish Mandal (Sun Sep 03 2017 - 21:57:09 PDT)
[AMBER] Calculation the Area per lipids using cpptraj
- Daniel Roe (Fri Sep 01 2017 - 06:13:58 PDT)
[AMBER] Can we specify the length and width of the water box in LEaP ?
- Xing (Mon Sep 11 2017 - 16:53:29 PDT)
- Robin Betz (Mon Sep 11 2017 - 16:35:54 PDT)
- Xing (Mon Sep 11 2017 - 16:27:45 PDT)
[AMBER] cluster analysis of protein complex simulation
- jacky zhao (Fri Sep 22 2017 - 18:22:43 PDT)
- Daniel Roe (Fri Sep 22 2017 - 09:36:12 PDT)
- Hai Nguyen (Fri Sep 22 2017 - 09:13:03 PDT)
- jacky zhao (Fri Sep 22 2017 - 08:10:09 PDT)
[AMBER] cluster analysis using cpptraj
- Sowmya Indrakumar (Mon Sep 25 2017 - 07:00:20 PDT)
- Elvis Martis (Mon Sep 25 2017 - 06:38:10 PDT)
- Daniel Roe (Mon Sep 25 2017 - 05:42:29 PDT)
- Bill Ross (Mon Sep 25 2017 - 03:00:38 PDT)
- Sowmya Indrakumar (Mon Sep 25 2017 - 02:55:57 PDT)
- Sowmya Indrakumar (Mon Sep 25 2017 - 02:47:51 PDT)
- Thomas Cheatham (Mon Sep 25 2017 - 02:47:51 PDT)
- Sowmya Indrakumar (Mon Sep 25 2017 - 02:38:52 PDT)
- Bill Ross (Mon Sep 25 2017 - 02:30:48 PDT)
- Bill Ross (Mon Sep 25 2017 - 02:29:18 PDT)
- Bill Ross (Mon Sep 25 2017 - 02:28:23 PDT)
- Sowmya Indrakumar (Mon Sep 25 2017 - 02:22:33 PDT)
[AMBER] CNT
- hongping zhang (Sun Sep 10 2017 - 18:58:34 PDT)
[AMBER] converting crd to pdb
- Rana Rehan Khalid (Tue Sep 19 2017 - 10:12:12 PDT)
- Hai Nguyen (Tue Sep 19 2017 - 10:11:45 PDT)
- Bill Ross (Tue Sep 19 2017 - 10:09:02 PDT)
- Rana Rehan Khalid (Tue Sep 19 2017 - 10:05:21 PDT)
[AMBER] Could not import Amber Python modules when using mdout_analyzer.py
- jacky zhao (Tue Sep 12 2017 - 20:06:00 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 19:58:04 PDT)
- jacky zhao (Tue Sep 12 2017 - 19:52:44 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 19:49:03 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 19:48:50 PDT)
- jacky zhao (Tue Sep 12 2017 - 19:45:30 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 19:43:50 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 19:39:10 PDT)
- jacky zhao (Tue Sep 12 2017 - 19:36:23 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 19:18:03 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 19:10:26 PDT)
- jacky zhao (Tue Sep 12 2017 - 18:52:04 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 05:57:25 PDT)
- jacky zhao (Tue Sep 12 2017 - 05:55:21 PDT)
- jacky zhao (Tue Sep 12 2017 - 05:54:12 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 05:45:00 PDT)
- jacky zhao (Tue Sep 12 2017 - 05:39:23 PDT)
- jacky zhao (Tue Sep 12 2017 - 05:31:26 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 05:25:30 PDT)
- jacky zhao (Tue Sep 12 2017 - 02:07:28 PDT)
- Hai Nguyen (Mon Sep 11 2017 - 21:39:44 PDT)
- jacky zhao (Mon Sep 11 2017 - 21:31:50 PDT)
[AMBER] CpHMD and cys residues
- Angus Voice (Mon Sep 18 2017 - 03:55:42 PDT)
[AMBER] CpHMD: seeking clarification
- George Tzotzos (Mon Sep 25 2017 - 07:36:01 PDT)
- Eric Lang (Mon Sep 25 2017 - 03:29:50 PDT)
- George Tzotzos (Sun Sep 24 2017 - 10:41:05 PDT)
[AMBER] cpinutil.py
- Hai Nguyen (Mon Sep 25 2017 - 10:57:46 PDT)
- Pacheco, Sayuri (Mon Sep 25 2017 - 10:47:39 PDT)
- Hai Nguyen (Thu Sep 21 2017 - 21:40:38 PDT)
- Pacheco, Sayuri (Thu Sep 21 2017 - 13:56:31 PDT)
- Adrian Roitberg (Thu Sep 21 2017 - 13:24:13 PDT)
- Pacheco, Sayuri (Thu Sep 21 2017 - 12:45:40 PDT)
[AMBER] Cpptraj
- Pacheco, Sayuri (Thu Sep 28 2017 - 14:59:02 PDT)
- Pacheco, Sayuri (Thu Sep 28 2017 - 14:52:09 PDT)
- Sayuri Pacheco (Thu Sep 28 2017 - 09:12:19 PDT)
- Daniel Roe (Thu Sep 28 2017 - 09:07:24 PDT)
- Sayuri Pacheco (Thu Sep 28 2017 - 09:01:42 PDT)
[AMBER] Cpptraj and parmwrite and strip
- Daniel Roe (Fri Sep 01 2017 - 13:27:18 PDT)
- Khabiri, Morteza (Fri Sep 01 2017 - 12:44:20 PDT)
- Khabiri, Morteza (Fri Sep 01 2017 - 12:37:58 PDT)
- Daniel Roe (Fri Sep 01 2017 - 12:05:44 PDT)
- Khabiri, Morteza (Fri Sep 01 2017 - 11:16:16 PDT)
[AMBER] cpptraj distance: error
- Daniel Roe (Tue Sep 26 2017 - 10:10:40 PDT)
- George Tzotzos (Tue Sep 26 2017 - 10:02:45 PDT)
- Daniel Roe (Tue Sep 26 2017 - 09:46:05 PDT)
- George Tzotzos (Tue Sep 26 2017 - 09:41:37 PDT)
[AMBER] cpptraj SPAM error
- George Tzotzos (Thu Sep 14 2017 - 09:42:20 PDT)
- Daniel Roe (Thu Sep 14 2017 - 09:34:56 PDT)
- George Tzotzos (Thu Sep 14 2017 - 09:04:09 PDT)
- Daniel Roe (Thu Sep 14 2017 - 08:49:37 PDT)
- George Tzotzos (Thu Sep 14 2017 - 08:33:07 PDT)
- George Tzotzos (Thu Sep 14 2017 - 08:30:48 PDT)
- Daniel Roe (Thu Sep 14 2017 - 08:16:55 PDT)
- George Tzotzos (Thu Sep 14 2017 - 08:13:50 PDT)
[AMBER] cpptraj volmap: some questions
- George Tzotzos (Wed Sep 20 2017 - 11:36:05 PDT)
- Daniel Roe (Wed Sep 20 2017 - 09:26:59 PDT)
- George Tzotzos (Fri Sep 15 2017 - 06:54:25 PDT)
[AMBER] cpptraj: modification of topologies/trajectories
- Daniel Roe (Mon Sep 18 2017 - 12:23:03 PDT)
- George Tzotzos (Mon Sep 18 2017 - 06:04:24 PDT)
- Daniel Roe (Mon Sep 18 2017 - 06:01:14 PDT)
- George Tzotzos (Mon Sep 18 2017 - 05:53:02 PDT)
- Daniel Roe (Mon Sep 18 2017 - 05:38:21 PDT)
- George Tzotzos (Sun Sep 17 2017 - 08:02:43 PDT)
[AMBER] cpptraj: usage of strip and parmstrip
- Daniel Roe (Mon Sep 18 2017 - 11:38:18 PDT)
- George Tzotzos (Mon Sep 18 2017 - 11:15:45 PDT)
[AMBER] Creation of unusual bonding via pdb4amber.
- Rajarshi Roy (Tue Sep 12 2017 - 22:52:43 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 21:16:50 PDT)
- Rajarshi Roy (Tue Sep 12 2017 - 20:56:29 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 19:36:38 PDT)
- Hai Nguyen (Tue Sep 12 2017 - 18:37:39 PDT)
- Rajarshi Roy (Tue Sep 12 2017 - 11:18:18 PDT)
[AMBER] Deprotonated SER side residue by AMBER?
- Michael Shokhen (Thu Sep 14 2017 - 06:25:52 PDT)
- David A Case (Thu Sep 14 2017 - 05:02:06 PDT)
- Michael Shokhen (Wed Sep 13 2017 - 10:18:07 PDT)
[AMBER] Different production speeds at different pHs when doing explicit constant pH simulations
- Jason Swails (Tue Sep 26 2017 - 12:27:06 PDT)
- Andrew Schaub (Mon Sep 25 2017 - 14:52:49 PDT)
- Adrian Roitberg (Sun Sep 24 2017 - 09:15:45 PDT)
- Andrew Schaub (Sat Sep 23 2017 - 23:47:36 PDT)
[AMBER] Distance restraint
- Lizelle Lubbe (Wed Sep 20 2017 - 07:26:44 PDT)
[AMBER] Dr. Nick Riviera
- Scott Brozell (Wed Sep 27 2017 - 18:18:20 PDT)
- Eric Pettersen (Wed Sep 27 2017 - 13:29:13 PDT)
- Niel Henriksen (Wed Sep 27 2017 - 13:20:07 PDT)
- Eric Pettersen (Wed Sep 27 2017 - 12:49:31 PDT)
- Eric Pettersen (Wed Sep 27 2017 - 12:43:21 PDT)
[AMBER] Error after using Parmed: A residue defined as "fast 3-point water"...
- Bill Ross (Thu Sep 07 2017 - 16:23:39 PDT)
- David Sáez (Thu Sep 07 2017 - 16:07:32 PDT)
[AMBER] Error bad atom Br
- James Kress (Sun Sep 03 2017 - 16:35:42 PDT)
- Fábio Jorge (Sun Sep 03 2017 - 12:43:58 PDT)
[AMBER] Error in MM-PBSA -- BondError: Cannot exclude an atom from itself
- 康宁 (Sun Sep 17 2017 - 18:47:37 PDT)
- Jason Swails (Sat Sep 09 2017 - 19:18:54 PDT)
- 康宁 (Fri Sep 08 2017 - 18:04:24 PDT)
- Bill Ross (Thu Sep 07 2017 - 01:11:27 PDT)
- 康宁 (Thu Sep 07 2017 - 00:47:07 PDT)
[AMBER] Error in pmemd.cuda
- David Sáez (Tue Sep 19 2017 - 22:58:39 PDT)
[AMBER] Error in quasiharmonic calculation: prmtop file?
- Daniel Roe (Mon Sep 11 2017 - 09:07:38 PDT)
- Nada Afiva (Sat Sep 09 2017 - 20:55:07 PDT)
- Hai Nguyen (Sat Sep 09 2017 - 19:52:44 PDT)
- Nada Afiva (Sat Sep 09 2017 - 19:50:48 PDT)
[AMBER] Error with MMGBSA/PBSA
- Elvis Martis (Thu Sep 28 2017 - 12:21:52 PDT)
- jacob wick (Thu Sep 28 2017 - 07:01:01 PDT)
- Elvis Martis (Wed Sep 27 2017 - 09:53:44 PDT)
- jacob wick (Wed Sep 27 2017 - 09:34:06 PDT)
- Elvis Martis (Wed Sep 27 2017 - 09:28:17 PDT)
- jacob wick (Wed Sep 27 2017 - 08:38:17 PDT)
[AMBER] Etot and TEMP become NaN during a simulation on commodity GPUs
- Ross Walker (Sat Sep 16 2017 - 07:00:21 PDT)
- Chris Neale (Fri Sep 15 2017 - 11:09:34 PDT)
- Chris Neale (Tue Sep 12 2017 - 10:16:47 PDT)
- Ross Walker (Tue Sep 12 2017 - 09:43:34 PDT)
- Chris Neale (Tue Sep 12 2017 - 09:28:30 PDT)
[AMBER] Explicit solvent CpHMD: seeking clarifications
- George Tzotzos (Mon Sep 04 2017 - 04:09:30 PDT)
- George Tzotzos (Mon Sep 04 2017 - 08:56:36 PDT)
- Cruzeiro,Vinicius Wilian D (Sun Sep 03 2017 - 06:26:13 PDT)
- George Tzotzos (Sun Sep 03 2017 - 04:57:44 PDT)
- Jason Swails (Sun Sep 03 2017 - 04:42:40 PDT)
- George Tzotzos (Sat Sep 02 2017 - 10:07:21 PDT)
[AMBER] Fixed links and files: Error in parmed: A residue defined as "fast 3-point water"...
- David Adrian Saez San Martin (Fri Sep 08 2017 - 12:58:25 PDT)
- David Adrian Saez San Martin (Fri Sep 08 2017 - 12:31:39 PDT)
- Bill Ross (Thu Sep 07 2017 - 17:25:17 PDT)
- David Adrian Saez San Martin (Thu Sep 07 2017 - 17:14:24 PDT)
[AMBER] Frcmod file for ionic liquids
- Shilpa Gupta (Fri Sep 08 2017 - 21:43:05 PDT)
- Bill Ross (Fri Sep 08 2017 - 12:22:46 PDT)
- guptashilpa_91.yahoo.com (Fri Sep 08 2017 - 07:42:13 PDT)
[AMBER] gamd.log for multiple runs
- Battocchio, Giovanni (Wed Sep 13 2017 - 01:05:26 PDT)
- Yinglong Miao (Tue Sep 12 2017 - 11:28:40 PDT)
- Ross Walker (Tue Sep 12 2017 - 09:15:18 PDT)
- Battocchio, Giovanni (Mon Sep 11 2017 - 02:37:35 PDT)
[AMBER] GPU-accelerated thermodynamic integration available in Amber
- Jason Swails (Wed Sep 13 2017 - 19:52:00 PDT)
- Hadházi Ádám (Wed Sep 13 2017 - 14:33:30 PDT)
- Daniel Mermelstein (Wed Sep 13 2017 - 13:16:39 PDT)
- Hadházi Ádám (Wed Sep 13 2017 - 11:33:49 PDT)
- Ross Walker (Tue Sep 12 2017 - 06:43:50 PDT)
- Darrin York (Tue Sep 12 2017 - 06:01:40 PDT)
[AMBER] H++ salinity
- Andreas Tosstorff (Fri Sep 01 2017 - 05:38:46 PDT)
[AMBER] Hoogsteen base pair using "useboundsfrom"
- Mandar Kulkarni (Tue Sep 19 2017 - 02:42:05 PDT)
[AMBER] How tleap read a Ruthenium complex solvent box generated by packmol?
- Sanaa ALAbbad (Tue Sep 19 2017 - 15:32:31 PDT)
- David A Case (Tue Sep 19 2017 - 02:39:54 PDT)
- Sanaa ALAbbad (Mon Sep 18 2017 - 15:18:03 PDT)
[AMBER] How to add the charged sphere (ion) with arbitrary charge to my PDB file.
- Parviz Seifpanahi Shabane (Sun Sep 03 2017 - 18:19:56 PDT)
- Bill Ross (Sun Sep 03 2017 - 18:17:29 PDT)
- Parviz Seifpanahi Shabane (Sun Sep 03 2017 - 18:15:32 PDT)
- Bill Ross (Sun Sep 03 2017 - 18:14:11 PDT)
- Parviz Seifpanahi Shabane (Sun Sep 03 2017 - 18:12:55 PDT)
- Bill Ross (Sun Sep 03 2017 - 18:11:50 PDT)
- Parviz Seifpanahi Shabane (Sun Sep 03 2017 - 18:10:13 PDT)
- Bill Ross (Fri Sep 01 2017 - 17:03:12 PDT)
- Bill Ross (Fri Sep 01 2017 - 17:01:45 PDT)
- Parviz Seifpanahi Shabane (Fri Sep 01 2017 - 16:57:38 PDT)
[AMBER] How to calculate RDF with 'radial'
- 杨满意 (Mon Sep 25 2017 - 04:44:12 PDT)
- Daniel Roe (Mon Sep 18 2017 - 11:22:15 PDT)
- 杨满意 (Wed Sep 13 2017 - 18:49:49 PDT)
- Daniel Roe (Wed Sep 13 2017 - 06:39:48 PDT)
- 杨满意 (Tue Sep 12 2017 - 20:58:06 PDT)
[AMBER] How to compare the difference between two trajectories with two very similar parm files
- jacky zhao (Fri Sep 22 2017 - 18:32:12 PDT)
[AMBER] How to save reimaged trajectory file during MD?
- Ravi Abrol (Wed Sep 27 2017 - 11:35:41 PDT)
- David A Case (Tue Sep 26 2017 - 10:17:15 PDT)
- Ravi Abrol (Tue Sep 26 2017 - 06:37:27 PDT)
- Elvis Martis (Tue Sep 26 2017 - 00:37:11 PDT)
- Ravi Abrol (Mon Sep 25 2017 - 22:51:57 PDT)
[AMBER] How to specify the liquid-liquid interface
- 鲁俊波 (Mon Sep 18 2017 - 01:45:49 PDT)
[AMBER] How to use two different force fields for a molecule?
- David A Case (Tue Sep 12 2017 - 04:16:11 PDT)
- Hai Nguyen (Mon Sep 11 2017 - 09:09:51 PDT)
- Anhui Wang (Mon Sep 11 2017 - 07:09:05 PDT)
[AMBER] I only receive a digest, but not specific answers to my posts
- David Adrian Saez San Martin (Fri Sep 08 2017 - 12:49:26 PDT)
- David Adrian Saez San Martin (Fri Sep 08 2017 - 12:36:40 PDT)
[AMBER] identifying the step of hbond interaction from trajectories
- Thakur, Abhishek (Fri Sep 29 2017 - 11:20:24 PDT)
[AMBER] identiy the step of interaction from an entire trajectory
- Thakur, Abhishek (Thu Sep 28 2017 - 12:10:47 PDT)
[AMBER] improper torsion terms
- Lizelle Lubbe (Wed Sep 20 2017 - 00:57:16 PDT)
- Pengfei Li (Tue Sep 19 2017 - 19:20:45 PDT)
- Lizelle Lubbe (Mon Sep 18 2017 - 09:07:08 PDT)
[AMBER] index error -reg
- David A Case (Sun Sep 10 2017 - 08:15:04 PDT)
- Jeyaram R A (Sun Sep 10 2017 - 04:54:00 PDT)
[AMBER] Installing Compiling Errors
- Timothy Schutt (Fri Sep 15 2017 - 09:56:08 PDT)
- David A Case (Thu Sep 14 2017 - 17:58:07 PDT)
- Timothy Schutt (Thu Sep 14 2017 - 15:00:25 PDT)
- Hai Nguyen (Thu Sep 14 2017 - 13:39:30 PDT)
- Timothy Schutt (Thu Sep 14 2017 - 13:30:10 PDT)
[AMBER] Inverting a selection in NAB atom expression?
- Istvan Kolossvary (Wed Sep 20 2017 - 13:47:52 PDT)
[AMBER] Is geometric center of atoms same as center of mass ?
- Daniel Roe (Mon Sep 18 2017 - 11:11:21 PDT)
- Daniel Roe (Sat Sep 16 2017 - 04:46:09 PDT)
- Saikat Pal (Sat Sep 16 2017 - 00:28:39 PDT)
[AMBER] Is it possible to compile without linking C++ and fortran?
- Daniel Roe (Thu Sep 21 2017 - 17:07:21 PDT)
- Timothy Schutt (Thu Sep 21 2017 - 15:12:04 PDT)
- Daniel Roe (Thu Sep 21 2017 - 12:26:29 PDT)
- Timothy Schutt (Thu Sep 21 2017 - 10:56:19 PDT)
[AMBER] leaprc.constph and ff14sb
- Carlos Simmerling (Thu Sep 28 2017 - 18:59:12 PDT)
- R zu (Thu Sep 28 2017 - 11:16:48 PDT)
- R zu (Thu Sep 28 2017 - 08:06:18 PDT)
[AMBER] Manually set residues Protonation states for HIS and CYS
- Rana Rehan Khalid (Mon Sep 18 2017 - 09:46:15 PDT)
- David A Case (Mon Sep 18 2017 - 08:19:11 PDT)
- Rana Rehan Khalid (Sun Sep 17 2017 - 12:30:16 PDT)
- Rana Rehan Khalid (Sun Sep 17 2017 - 12:27:46 PDT)
[AMBER] MCPB.py AmberTools17
- Pengfei Li (Sat Sep 23 2017 - 15:28:56 PDT)
- Amani Eshtiwi (Thu Sep 21 2017 - 09:36:18 PDT)
[AMBER] Mcpb.py for bay60 compound
- Pengfei Li (Tue Sep 19 2017 - 20:08:41 PDT)
- Rana Rehan Khalid (Sat Sep 16 2017 - 12:20:08 PDT)
- Rana Rehan Khalid (Sat Sep 16 2017 - 10:43:17 PDT)
[AMBER] MCPB.py hbay.in input (system does not have metal ion)
- David A Case (Sun Sep 17 2017 - 09:25:44 PDT)
- Bill Ross (Sun Sep 17 2017 - 00:04:23 PDT)
- Rana Rehan Khalid (Sat Sep 16 2017 - 23:58:25 PDT)
- Bill Ross (Sat Sep 16 2017 - 12:46:09 PDT)
- Rana Rehan Khalid (Sat Sep 16 2017 - 12:30:28 PDT)
- Rana Rehan Khalid (Sat Sep 16 2017 - 12:19:05 PDT)
[AMBER] MD terminate in HPC
- David A Case (Wed Sep 06 2017 - 05:43:06 PDT)
- Elvis Martis (Wed Sep 06 2017 - 05:42:58 PDT)
- Garima Singh (Wed Sep 06 2017 - 03:49:05 PDT)
[AMBER] mdcrd file not open in vmd
- Rana Rehan Khalid (Fri Sep 22 2017 - 11:23:13 PDT)
- Daniel Roe (Fri Sep 22 2017 - 11:04:27 PDT)
- Rana Rehan Khalid (Fri Sep 22 2017 - 10:47:51 PDT)
[AMBER] Minimization error due to modified residue
- Lizelle Lubbe (Tue Sep 12 2017 - 07:43:13 PDT)
- Lizelle Lubbe (Tue Sep 12 2017 - 05:05:32 PDT)
- Ross Walker (Mon Sep 11 2017 - 10:05:21 PDT)
- Lizelle Lubbe (Mon Sep 11 2017 - 08:43:07 PDT)
- Bill Ross (Mon Sep 11 2017 - 08:32:01 PDT)
- Shafaq Muzammal (Mon Sep 11 2017 - 08:09:24 PDT)
- Lizelle Lubbe (Mon Sep 11 2017 - 07:59:38 PDT)
- Shafaq Muzammal (Mon Sep 11 2017 - 07:57:48 PDT)
- Bill Ross (Mon Sep 11 2017 - 07:57:24 PDT)
- Bill Ross (Mon Sep 11 2017 - 07:55:16 PDT)
- Lizelle Lubbe (Mon Sep 11 2017 - 07:48:26 PDT)
- Bill Ross (Mon Sep 11 2017 - 07:37:24 PDT)
- Lizelle Lubbe (Mon Sep 11 2017 - 07:30:29 PDT)
- Bill Ross (Mon Sep 11 2017 - 07:28:24 PDT)
- Lizelle Lubbe (Mon Sep 11 2017 - 07:21:05 PDT)
- Lizelle Lubbe (Mon Sep 11 2017 - 07:03:57 PDT)
- Lizelle Lubbe (Mon Sep 11 2017 - 06:12:46 PDT)
- Bill Ross (Mon Sep 11 2017 - 06:09:40 PDT)
[AMBER] Missing amino acids preparation for long-term simulation
- jacky zhao (Fri Sep 01 2017 - 09:31:43 PDT)
[AMBER] MMPBSA error
- Sebastian Franco Ulloa (Mon Sep 11 2017 - 02:10:18 PDT)
[AMBER] MMPBSA.py failing with topologies
- Sebastian Franco Ulloa (Thu Sep 14 2017 - 00:17:44 PDT)
- Sebastian Franco Ulloa (Wed Sep 13 2017 - 23:42:48 PDT)
- Dwight McGee (Wed Sep 13 2017 - 22:29:16 PDT)
- Sebastian Franco Ulloa (Mon Sep 11 2017 - 01:46:18 PDT)
[AMBER] Moldeling with MCPB.py
- Lê Ngọc Chính (Sun Sep 10 2017 - 09:22:02 PDT)
- Pengfei Li (Tue Sep 05 2017 - 05:33:26 PDT)
- Lê Ngọc Chính (Mon Sep 04 2017 - 04:09:45 PDT)
[AMBER] moveanchor
- Daniel Roe (Thu Sep 28 2017 - 09:13:24 PDT)
- waleed zalloum (Thu Sep 28 2017 - 04:41:55 PDT)
[AMBER] Multiple Simulations on One GPU
- Ross Walker (Sat Sep 30 2017 - 05:43:28 PDT)
- R zu (Fri Sep 29 2017 - 14:58:43 PDT)
[AMBER] NEW machine need help with GPU choice.
- Ross Walker (Tue Sep 12 2017 - 06:09:01 PDT)
- David Cerutti (Mon Sep 11 2017 - 19:25:06 PDT)
- Mohit Mazumder (Mon Sep 11 2017 - 18:46:02 PDT)
[AMBER] New Phospho Amino Acids Parameters?
- Carlos Simmerling (Fri Sep 15 2017 - 09:29:51 PDT)
- martin.lepsik.uochb.cas.cz (Fri Sep 15 2017 - 01:32:46 PDT)
[AMBER] Obtaining AM1-BCC charges in Antechamber
- David A Case (Mon Sep 11 2017 - 05:19:18 PDT)
- Zachary Smithline (Sat Sep 09 2017 - 23:33:14 PDT)
[AMBER] Oct 2 deadline for awards applications, Computers in Chemistry Division of ACS
- Carlos Simmerling (Wed Sep 06 2017 - 05:27:12 PDT)
[AMBER] pmemd and sander simulations different - sander equilibration crashes
- Chayya Bhargac (Wed Sep 13 2017 - 09:30:11 PDT)
- Chayya Bhargac (Wed Sep 13 2017 - 09:25:38 PDT)
- David A Case (Tue Sep 12 2017 - 04:25:07 PDT)
- Chayya Bhargac (Mon Sep 11 2017 - 10:51:32 PDT)
- Chayya Bhargac (Mon Sep 11 2017 - 09:34:14 PDT)
[AMBER] PMEMD TERMINATED ABNORMALLY (But simulation run with sander command)
- Rana Rehan Khalid (Sat Sep 23 2017 - 14:39:07 PDT)
- David A Case (Sat Sep 23 2017 - 14:30:19 PDT)
- Rana Rehan Khalid (Fri Sep 22 2017 - 09:30:42 PDT)
- Bill Ross (Fri Sep 22 2017 - 08:07:12 PDT)
- Rana Rehan Khalid (Fri Sep 22 2017 - 08:04:55 PDT)
[AMBER] Pressure tensor
- Sonata Kvedaravičiūtė (Fri Sep 01 2017 - 01:43:48 PDT)
[AMBER] Problem in analysing radius of gyration value in CPPTRAJ
- krishna.2015.iitg.ernet.in (Thu Sep 28 2017 - 04:01:40 PDT)
- Hai Nguyen (Wed Sep 27 2017 - 06:21:30 PDT)
- Daniel Roe (Wed Sep 27 2017 - 06:00:24 PDT)
- krishna.2015.iitg.ernet.in (Tue Sep 26 2017 - 09:07:04 PDT)
[AMBER] Problem in restarting pH-REMD CpHMD
- Elisa Pieri (Sat Sep 09 2017 - 01:14:12 PDT)
- Daniel Roe (Fri Sep 08 2017 - 11:09:08 PDT)
- Elisa Pieri (Fri Sep 08 2017 - 05:43:56 PDT)
[AMBER] Problem regarding Chamber and psf file
- David Sáez (Thu Sep 21 2017 - 21:30:22 PDT)
- Jason Swails (Thu Sep 21 2017 - 20:16:41 PDT)
- David Sáez (Thu Sep 21 2017 - 13:45:09 PDT)
[AMBER] Problem with MM-GBSA decomposition
- Sergey Samsonov (Thu Sep 28 2017 - 00:05:20 PDT)
- Daniel Roe (Wed Sep 27 2017 - 10:22:47 PDT)
- Sergey Samsonov (Tue Sep 26 2017 - 00:13:59 PDT)
[AMBER] Problem with parallel install
- Maria Clelia Milletti (Thu Sep 21 2017 - 10:35:45 PDT)
- Bill Ross (Thu Sep 21 2017 - 09:57:09 PDT)
- Daniel Roe (Thu Sep 21 2017 - 08:01:37 PDT)
- Maria Clelia Milletti (Thu Sep 21 2017 - 06:54:18 PDT)
- Bill Ross (Wed Sep 20 2017 - 16:49:02 PDT)
- Maria Clelia Milletti (Wed Sep 20 2017 - 13:54:28 PDT)
- Bill Ross (Wed Sep 20 2017 - 13:44:00 PDT)
- Maria Clelia Milletti (Wed Sep 20 2017 - 13:13:55 PDT)
- Bill Ross (Wed Sep 20 2017 - 12:33:18 PDT)
- Maria Clelia Milletti (Wed Sep 20 2017 - 12:30:25 PDT)
- Daniel Roe (Tue Sep 19 2017 - 10:26:06 PDT)
- Maria Clelia Milletti (Tue Sep 19 2017 - 08:53:20 PDT)
- Daniel Roe (Tue Sep 19 2017 - 07:42:47 PDT)
- Maria Clelia Milletti (Tue Sep 19 2017 - 07:35:58 PDT)
- David A Case (Mon Sep 18 2017 - 13:33:30 PDT)
- Maria Clelia Milletti (Mon Sep 18 2017 - 09:18:47 PDT)
[AMBER] Protein drifts out of the periodic cell
- Michael Shokhen (Wed Sep 20 2017 - 09:03:24 PDT)
- Daniel Roe (Wed Sep 20 2017 - 08:56:16 PDT)
- Michael Shokhen (Wed Sep 20 2017 - 08:35:22 PDT)
- Daniel Roe (Wed Sep 20 2017 - 05:35:22 PDT)
- Michael Shokhen (Wed Sep 20 2017 - 02:21:07 PDT)
[AMBER] protein-membrane visualize in VMD
- Kanin Wichapong (Wed Sep 20 2017 - 09:00:05 PDT)
[AMBER] PyRed
- Steven M. Graham (Mon Sep 25 2017 - 18:42:18 PDT)
[AMBER] Pytraj Gyration Tensor
- Hai Nguyen (Thu Sep 21 2017 - 21:43:16 PDT)
- Hai Nguyen (Thu Sep 21 2017 - 12:38:32 PDT)
- Daniel Roe (Thu Sep 21 2017 - 12:35:56 PDT)
- Hai Nguyen (Thu Sep 21 2017 - 10:28:13 PDT)
- Domenico Marson (Thu Sep 21 2017 - 10:08:04 PDT)
- Domenico Marson (Thu Sep 21 2017 - 06:32:28 PDT)
- Hai Nguyen (Thu Sep 21 2017 - 05:33:22 PDT)
- Domenico Marson (Thu Sep 21 2017 - 04:29:54 PDT)
- Hai Nguyen (Tue Sep 19 2017 - 05:49:25 PDT)
- Domenico Marson (Tue Sep 19 2017 - 03:18:19 PDT)
[AMBER] Quasi-Harmonic Analysis and Entropy Calculations in cpptraj - Help Requested
- Celeste Saguí (Thu Sep 21 2017 - 20:23:38 PDT)
- Mo Rahman (Thu Sep 21 2017 - 13:15:56 PDT)
- Daniel Roe (Thu Sep 21 2017 - 12:43:10 PDT)
- Mo Rahman (Thu Sep 21 2017 - 10:16:43 PDT)
- Daniel Roe (Thu Sep 21 2017 - 08:53:44 PDT)
- Mo Rahman (Thu Sep 21 2017 - 08:36:55 PDT)
[AMBER] Question about MCPB.py
- Pengfei Li (Sat Sep 23 2017 - 15:14:04 PDT)
- Lê Ngọc Chính (Thu Sep 21 2017 - 09:57:27 PDT)
- Hai Nguyen (Thu Sep 21 2017 - 09:49:12 PDT)
- Lê Ngọc Chính (Thu Sep 21 2017 - 09:26:05 PDT)
- Lê Ngọc Chính (Thu Sep 21 2017 - 00:07:33 PDT)
[AMBER] Question about MM/PBSA idecomp=1: decomposed Eelec stays the same when internal dielec constant increases. Is this a bug?
- Guqin Shi (Tue Sep 05 2017 - 08:54:40 PDT)
[AMBER] Question about MM/PBSA idecomp=1: Eelec from receptor and ligand don't add up
- Guqin Shi (Mon Sep 04 2017 - 17:13:25 PDT)
[AMBER] RAC_analysis
- Daniel Roe (Thu Sep 28 2017 - 09:08:44 PDT)
- jacky zhao (Thu Sep 28 2017 - 06:53:27 PDT)
[AMBER] Rebuilt missing amino acid gap is critical for long-time MD simulation by Amber
- jacky zhao (Wed Sep 13 2017 - 05:13:13 PDT)
- Carlos Simmerling (Sat Sep 09 2017 - 04:16:12 PDT)
- jacky zhao (Sat Sep 09 2017 - 00:25:57 PDT)
- Carlos Simmerling (Fri Sep 08 2017 - 07:39:14 PDT)
- jacky zhao (Fri Sep 08 2017 - 07:28:56 PDT)
- jacky zhao (Mon Sep 04 2017 - 22:00:53 PDT)
[AMBER] reduce command warnings
- Rana Rehan Khalid (Tue Sep 19 2017 - 08:13:30 PDT)
[AMBER] Reduce command warnings Skipped hydrogen
- Rana Rehan Khalid (Thu Sep 21 2017 - 11:21:42 PDT)
- Rana Rehan Khalid (Thu Sep 21 2017 - 10:55:00 PDT)
[AMBER] Regarding Glucose naming
- Aashish Bhatt (Tue Sep 12 2017 - 08:00:12 PDT)
- Hector A. Baldoni (Sun Sep 10 2017 - 11:02:38 PDT)
- Aashish Bhatt (Sun Sep 10 2017 - 00:57:44 PDT)
- Elvis Martis (Sat Sep 09 2017 - 20:06:26 PDT)
- Aashish Bhatt (Sat Sep 09 2017 - 08:02:12 PDT)
[AMBER] REMD one long or many short runs?
- Carlos Simmerling (Wed Sep 13 2017 - 06:37:28 PDT)
- Andreas Tosstorff (Wed Sep 13 2017 - 06:18:02 PDT)
[AMBER] Residue wise energy decomposition via MM-PBSA
- Rajarshi Roy (Wed Sep 06 2017 - 00:20:34 PDT)
- Elvis Martis (Tue Sep 05 2017 - 23:37:16 PDT)
- Rajarshi Roy (Mon Sep 04 2017 - 21:06:49 PDT)
[AMBER] Restart Simulation
- Daniel Roe (Tue Sep 19 2017 - 11:39:45 PDT)
- Rana Rehan Khalid (Tue Sep 19 2017 - 11:29:44 PDT)
[AMBER] rmsf < 5A
- Daniel Roe (Mon Sep 11 2017 - 06:07:34 PDT)
- colvin (Mon Sep 11 2017 - 01:11:46 PDT)
[AMBER] Setting water box with fix dimension
- David A Case (Thu Sep 21 2017 - 13:30:33 PDT)
- Bill Ross (Thu Sep 21 2017 - 13:00:01 PDT)
- Daniel Roe (Thu Sep 21 2017 - 12:58:59 PDT)
- Bill Ross (Thu Sep 21 2017 - 12:58:27 PDT)
- Ashutosh Shandilya (Thu Sep 21 2017 - 12:55:39 PDT)
- Daniel Roe (Thu Sep 21 2017 - 12:46:09 PDT)
- Ashutosh Shandilya (Thu Sep 21 2017 - 09:13:45 PDT)
[AMBER] SHAKE failure
- Lizelle Lubbe (Tue Sep 26 2017 - 06:14:46 PDT)
- Lizelle Lubbe (Tue Sep 26 2017 - 05:56:35 PDT)
- Lizelle Lubbe (Tue Sep 26 2017 - 03:34:12 PDT)
- Pengfei Li (Sat Sep 23 2017 - 14:34:31 PDT)
- Lizelle Lubbe (Fri Sep 22 2017 - 11:40:36 PDT)
- Lizelle Lubbe (Fri Sep 22 2017 - 11:37:05 PDT)
- Bill Ross (Fri Sep 22 2017 - 07:18:42 PDT)
- Daniel Roe (Fri Sep 22 2017 - 07:08:39 PDT)
- Lizelle Lubbe (Fri Sep 22 2017 - 05:30:13 PDT)
[AMBER] significance of iwrap
- Daniel Roe (Fri Sep 01 2017 - 05:22:06 PDT)
- Saikat Pal (Fri Sep 01 2017 - 04:59:28 PDT)
[AMBER] simulation of docked domains of protein
- David A Case (Thu Sep 21 2017 - 13:16:55 PDT)
- Elvis Martis (Wed Sep 20 2017 - 23:03:05 PDT)
- Bill Ross (Wed Sep 20 2017 - 12:49:30 PDT)
- Rana Rehan Khalid (Wed Sep 20 2017 - 12:45:17 PDT)
- Elvis Martis (Wed Sep 20 2017 - 09:36:07 PDT)
- Rana Rehan Khalid (Wed Sep 20 2017 - 09:26:30 PDT)
[AMBER] simulation stop due to size limit exceed
- Rana Rehan Khalid (Thu Sep 21 2017 - 09:17:54 PDT)
- Chris Neale (Thu Sep 21 2017 - 09:16:05 PDT)
- Rana Rehan Khalid (Thu Sep 21 2017 - 05:36:43 PDT)
[AMBER] simulation time
- Chris Neale (Tue Sep 19 2017 - 19:53:55 PDT)
- Pengfei Li (Tue Sep 19 2017 - 19:25:23 PDT)
- Pengfei Li (Tue Sep 19 2017 - 19:25:05 PDT)
- Elvis Martis (Sat Sep 16 2017 - 20:22:16 PDT)
- Rana Rehan Khalid (Sat Sep 16 2017 - 12:07:45 PDT)
- Hai Nguyen (Sat Sep 16 2017 - 11:39:04 PDT)
- Elvis Martis (Sat Sep 16 2017 - 11:34:34 PDT)
- Rana Rehan Khalid (Sat Sep 16 2017 - 11:31:29 PDT)
- Elvis Martis (Sat Sep 16 2017 - 11:14:40 PDT)
- Rana Rehan Khalid (Sat Sep 16 2017 - 09:52:51 PDT)
[AMBER] simulations crash
- Daniel Roe (Fri Sep 22 2017 - 07:03:02 PDT)
- Carlos Simmerling (Fri Sep 22 2017 - 05:48:16 PDT)
- Ana Luisa Novo de Oliveira (Fri Sep 22 2017 - 05:18:30 PDT)
- Carlos Simmerling (Fri Sep 22 2017 - 05:12:44 PDT)
- Ana Luisa Novo de Oliveira (Fri Sep 22 2017 - 04:50:07 PDT)
[AMBER] Split the image to run in the string method
- Feng Pan (Thu Sep 21 2017 - 15:06:13 PDT)
- Chunli Yan (Thu Sep 21 2017 - 12:50:50 PDT)
[AMBER] TI where charges change
- Hadházi Ádám (Thu Sep 14 2017 - 10:44:15 PDT)
- David A Case (Thu Sep 14 2017 - 08:05:13 PDT)
- Hadházi Ádám (Thu Sep 14 2017 - 06:10:46 PDT)
- Adrian Roitberg (Thu Sep 14 2017 - 05:38:53 PDT)
- David A Case (Thu Sep 14 2017 - 04:51:26 PDT)
[AMBER] TIP3p lennard jones parameters
- Pengfei Li (Mon Sep 11 2017 - 09:28:01 PDT)
[AMBER] tleap atom numbering
- Bill Ross (Mon Sep 11 2017 - 16:24:40 PDT)
- Neha Gandhi (Mon Sep 11 2017 - 14:38:23 PDT)
- David A Case (Mon Sep 11 2017 - 05:07:13 PDT)
- Neha Gandhi (Sun Sep 10 2017 - 18:38:03 PDT)
[AMBER] tleap error
- jacky zhao (Wed Sep 13 2017 - 06:48:03 PDT)
- David A Case (Wed Sep 13 2017 - 06:27:46 PDT)
- jacky zhao (Wed Sep 13 2017 - 05:15:56 PDT)
- jacky zhao (Wed Sep 13 2017 - 03:28:24 PDT)
[AMBER] TLEAP generation of ionized amino acid residue?
- Michael Shokhen (Mon Sep 11 2017 - 03:38:55 PDT)
[AMBER] Total energy of peptide simulation is positive
- Chetna Tyagi (Thu Sep 14 2017 - 08:31:06 PDT)
- David A Case (Thu Sep 14 2017 - 08:11:57 PDT)
- Chetna Tyagi (Thu Sep 14 2017 - 05:51:00 PDT)
[AMBER] trajout last x frames cpptraj
- Hughes, Travis (Fri Sep 29 2017 - 07:34:35 PDT)
- Hai Nguyen (Thu Sep 28 2017 - 20:28:55 PDT)
- Hai Nguyen (Thu Sep 28 2017 - 20:27:32 PDT)
- R zu (Thu Sep 28 2017 - 18:52:15 PDT)
- R zu (Thu Sep 28 2017 - 18:45:58 PDT)
- Hughes, Travis (Thu Sep 28 2017 - 11:23:06 PDT)
[AMBER] umbrella sampling - restraint problem
- Daniel Roe (Mon Sep 11 2017 - 06:04:06 PDT)
- Nisha Amarnath Jonniya (Sun Sep 10 2017 - 22:21:44 PDT)
- Carlos Simmerling (Fri Sep 08 2017 - 08:20:04 PDT)
- Nisha Amarnath Jonniya (Fri Sep 08 2017 - 07:57:10 PDT)
- diego.soler.uam.es (Fri Sep 08 2017 - 05:50:17 PDT)
- Nisha Amarnath Jonniya (Fri Sep 08 2017 - 04:37:14 PDT)
[AMBER] Using FEW with a transmembrane protein
- Tarsis (Mon Sep 25 2017 - 10:34:32 PDT)
[AMBER] water bridge analysis
- pancham lal Gupta (Mon Sep 25 2017 - 17:22:09 PDT)
- Thakur, Abhishek (Mon Sep 25 2017 - 15:17:00 PDT)
[AMBER] Zinc dummy atom error in MMPBSA calculation
- Bill Ross (Wed Sep 06 2017 - 10:05:06 PDT)
- Sharon D. Morris (Tue Sep 05 2017 - 22:26:13 PDT)
Is it possible to compile without linking C++ and fortran?]
- Daniel Roe (Fri Sep 22 2017 - 06:59:31 PDT)
- Timothy Schutt (Thu Sep 21 2017 - 14:15:31 PDT)
- David A Case (Thu Sep 21 2017 - 13:46:29 PDT)
Problem in analysing radius of gyration value in CPPTRAJ]
- krishna.2015.iitg.ernet.in (Wed Sep 27 2017 - 11:35:23 PDT)

Amber Archive Sep 2017 by subject