Dear sir
I have checked naming in amber manual but i didn't understand i have also
checked naming in GLYCAM_06j-1.prep file but they showed only 0GA,1GA,2GA
type but how can i put only single complete GLUCOSE.
On Sun, Sep 10, 2017 at 8:36 AM, Elvis Martis <elvis.martis.bcp.edu.in>
wrote:
> Hi ,
> There are specific residue names for each monosaccharide as defined by
> GLYCAM FF.
> Just see the manual what is the residue name for your case.
>
> Best Regards
> Elvis Martis
> Mumbai, INDIA.
>
> ________________________________________
> From: Aashish Bhatt <aashish.ph16221.inst.ac.in>
> Sent: 09 September 2017 20:32
> To: amber.ambermd.org
> Subject: [AMBER] Regarding Glucose naming
>
> Dear Sir/Ma"am
>
> I have problem in naming of monosaccharide. I have used name of Glucose as
> GLC. and also supplied leaprc.GLYCAM_06j-1 file. but it did not recognize.
> please let me know if there is any other way of giving GLC as input.
>
>
> Thanking you
>
> Aashish Bhatt
> Institute of nanoscience and technology
> Mohali, India
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Received on Sun Sep 10 2017 - 01:00:02 PDT
