[AMBER] tleap atom numbering

From: Neha Gandhi <n.gandhiau.gmail.com>
Date: Mon, 11 Sep 2017 11:38:03 +1000

Dear List,

I have prepared frcmod file for carbon nanotube based on Hummer et al (
*Nature* *414*, 188-190 (8 November 2001). The CNT pdb file consists of >
999 atoms (120 A long) and when I load it in tleap, tleap will not
recognise atoms beyond 999 and will try adding atoms again.

I also tried using a single unit cell of carbon ring but then I faced
issues combining different unit cells together with a carbon-carbon bond.

Is there a way to work around this file?

Many thanks,
Neha
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Received on Sun Sep 10 2017 - 19:00:03 PDT
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