Re: [AMBER] How tleap read a Ruthenium complex solvent box generated by packmol?

From: David A Case <david.case.rutgers.edu>
Date: Tue, 19 Sep 2017 11:39:54 +0200

On Mon, Sep 18, 2017, Sanaa ALAbbad wrote:

> 2) changing the water residue name from HOH to WAT, HETATOM to ATOM, TER
> each molecule (this will require a lot of work)

You should not need to do any of the above steps: tleap should be just fine
with the original file: it knows that HOH and WAT are the same, doesn't care
about HETATM vs ATOM, and does not require TER cards between waters.

....dac


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Received on Tue Sep 19 2017 - 03:00:02 PDT
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