Re: [AMBER] mdcrd file not open in vmd

From: Rana Rehan Khalid <rrkhalid.umich.edu>
Date: Fri, 22 Sep 2017 23:23:13 +0500

thank you Sir it works.

On Fri, Sep 22, 2017 at 11:04 PM, Daniel Roe <daniel.r.roe.gmail.com> wrote:

> I'm guessing the format of the trajectory is really NetCDF, which has
> become the default format for sander/pmemd. Open it as a NetCDF
> trajectory and/or use the '-netcdf' vmd command line flag.
>
> -Dan
>
> On Fri, Sep 22, 2017 at 1:47 PM, Rana Rehan Khalid <rrkhalid.umich.edu>
> wrote:
> > Hi Everybody
> >
> > I loaded the prmtop file in the vmd after that when I load the mdcrd
> file
> > it does not loaded the trajectory information. While i convert the .rst
> to
> > pdb it looks fine. kindly guide how i can open the mdcrd file after
> prmtop.
> > The file size is 3.6 mb
> >
> >
> > Regards
> > _______________________________________________
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> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
>
> --
> -------------------------
> Daniel R. Roe
> Laboratory of Computational Biology
> National Institutes of Health, NHLBI
> 5635 Fishers Ln, Rm T900
> Rockville MD, 20852
> https://www.lobos.nih.gov/lcb
>
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>
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Received on Fri Sep 22 2017 - 11:30:04 PDT
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