I'm guessing the format of the trajectory is really NetCDF, which has
become the default format for sander/pmemd. Open it as a NetCDF
trajectory and/or use the '-netcdf' vmd command line flag.
-Dan
On Fri, Sep 22, 2017 at 1:47 PM, Rana Rehan Khalid <rrkhalid.umich.edu> wrote:
> Hi Everybody
>
> I loaded the prmtop file in the vmd after that when I load the mdcrd file
> it does not loaded the trajectory information. While i convert the .rst to
> pdb it looks fine. kindly guide how i can open the mdcrd file after prmtop.
> The file size is 3.6 mb
>
>
> Regards
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--
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Fri Sep 22 2017 - 11:30:02 PDT
