Dear Amber Users,
I wish to calculate the angle between the two subdomains. For instance, if 1-30 (subdomian I), residue 31 is the hinge residue, 32-70(subdomain II).
So this is how I have calculated the angle
angle .1-30 .31 . 32-70 out *.dat
So my question here is, does it consider the COM when I mention .1-30 (center of Mass of residue 1 to 30)??
I look forward for you're comments/suggestions.
Thanks
Regards
Sowmya
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Received on Tue Sep 19 2017 - 07:00:02 PDT
