[AMBER] Using FEW with a transmembrane protein

From: Tarsis <tarsis.ferreira.gmail.com>
Date: Mon, 25 Sep 2017 12:34:32 -0500

Hi,

I'm trying to use FEW to calculate the free energy of a ligand bound to a
transmembrane protein. I used the unbound protein + membrane topology as
receptor as "rec_structure".

When I run FEW.pl MMPBSA *my_leap_input* I get no output. I have no idea if
this is the right way of doing this. Does anybody knows if one can use the
topology to generate FEW inputs?

Thanks
-- 
Tarsis Gesteira
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Sep 25 2017 - 11:00:02 PDT
Custom Search