On Thu, Sep 28, 2017 at 12:01 PM, Sayuri Pacheco
<sayuri.pacheco.987.my.csun.edu> wrote:
> Hi,
> I used cpptraj to strip certain amino acids from my protein and create a new prmtop and .nc file using the following commands.
> parm myfile.prmtop
> Trajin myfile.nc
> Strip ! : 90-178 outprefix strip
> Trajout myfile.nc
> Go
> I was wondering if you can create stripped .inpcrd files in cpptraj?
Sure, just do 'trajout myfile.inpcrd restart' after the 'strip'
command. See the manual for the full list of supported trajectory
formats as well as full syntax for 'trajout'.
-Dan
>
> Sent from my iPad
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--
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Thu Sep 28 2017 - 09:30:04 PDT
