Re: [AMBER] Minimization error due to modified residue

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Mon, 11 Sep 2017 06:09:40 -0700

Are you using ntc=2, ntf=2?

This would be required to keep TIP3 H's within the boundary of the O vdw
radius, since the H's have no radius.

Bill


On 9/11/17 5:38 AM, Lizelle Lubbe wrote:
> the atoms 6143 OE1 of GLR389 (the ZN-coordinated Glu) and 12495 H1 of WAR (the ZN-coordinated TIP3p water) overlap


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Received on Mon Sep 11 2017 - 06:30:08 PDT
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