hi,
I think you're able to use that program and the original error message is
misleading.
I don't know why then. Let's wait for Jason (wrote that program) to reply
to you.
Hai
On Tue, Sep 12, 2017 at 5:07 AM, jacky zhao <jackyzhao010.gmail.com> wrote:
> Thank you for your immediately reply. I have installed Amber16 and
> AmberTools17. When I was installed AmberTools17, python has been suggested
> to install. However, due to the limit of download speed. I could not
> download and install python during AmberTools17 installation. So I have
> download python2.7.5 from the official website.
> According to your suggestion, I have input these command line. I
> interestingly found there is no error message. These messages were attached
> below:
>
>
>
> Hai Nguyen <nhai.qn.gmail.com>于2017年9月12日 周二下午12:39写道：
>
> > hi
> >
> > how did you install your python?
> > can you try this:
> >
> > python -c "import mdoutanalyzer; print(mdoutanalyzer)"
> >
> > python -c "import os; print(os.getenv('PYTHONPATH'))"
> >
> > Hai
> >
> > On Tue, Sep 12, 2017 at 12:31 AM, jacky zhao <jackyzhao010.gmail.com>
> > wrote:
> >
> > > Hi everyone
> > > When I used mdout_analyzer.py to analysis the output files of my
> > > simulation, the error occur. According to the suggestion, we have
> source
> > > the amber.sh without any error messages.
> > > More importantly, I can use mmpbse.MPI.py to calculate binding energy
> > > without any error.
> > > The PYTHONPATH is
> > > /home/jacky/amber16/lib/python2.7/site-packages:/home/
> > > jacky/amber16/lib/python2.7/site-packages:/usr/lib64/
> > > python2.7/site-packages/:/usr/lib64/python2.7/site-packages/
> > > :/home/jacky/amber16/lib64/python2.7/site-packages/
> > >
> > > Anyone can give me some suggestions?
> > >
> > > Thank you for taking your time
> > >
> > >
> > >
> > > The error message was attached below:
> > > analysis mdout_analyzer.py ../test22_md_1ms.out ../test22_md_1-1ms.out
> > > ../test22_md_1-2ms.out ../test22_md_2ms.out
> > > Traceback (most recent call last):
> > > File "/home/jacky/amber16/bin/mdout_analyzer.py", line 18, in
> <module>
> > > (amberhome, amberhome))
> > > ImportError: Could not import Amber Python modules. Please make sure
> you
> > > have sourced /home/jacky/amber16/amber.sh (if you are using
> > > sh/ksh/bash/zsh) or /home/jacky/amber16/amber.csh (if you are using
> > > csh/tcsh)
> > >
> > >
> > > --
> > > Lei Zhao, Ph.D.
> > > International Joint Cancer Institute of the Second Military Medical
> > > University
> > > National Engineering Research Center for Antibody Medicine
> > > New Library Building 11th floor,800 Xiang Yin Road
> > > Shanghai 200433
> > > P.R.China
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> --
> Lei Zhao, Ph.D.
> International Joint Cancer Institute of the Second Military Medical
> University
> National Engineering Research Center for Antibody Medicine
> New Library Building 11th floor,800 Xiang Yin Road
> Shanghai 200433
> P.R.China
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
>
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Received on Tue Sep 12 2017 - 05:30:03 PDT
