[AMBER] How to compare the difference between two trajectories with two very similar parm files

From: jacky zhao <jackyzhao010.gmail.com>
Date: Sat, 23 Sep 2017 09:32:12 +0800

Hi everyone
   Ambertools are the valuable toolkits for MD analysis. There are PCA,
combine cluster analysis and rms2d to compare the difference between two
trajectories with the same parm input files.
Recently, we have performed two MD simulations with or without rebuilding
missing amino acid gap. Therefore, there are two parm input files. I am
wondering How to compare the difference between two trajectories with two
different parm7 files.

Thank you very much.

-- 
Lei Zhao, Ph.D.
International Joint Cancer Institute of the Second Military Medical
University
National Engineering Research Center for Antibody Medicine
New Library Building 11th floor,800 Xiang Yin Road
Shanghai 200433
P.R.China
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Received on Fri Sep 22 2017 - 19:00:02 PDT