Probably if you searched on the error message, you'd find that the pdb
and residue template (which must exist) must agree on atom names for the
residues.
Bill
On 9/11/17 8:04 AM, Jeyaram R A wrote:
> Hello Everyone,
>
> I am using tleap to generate topology and coordinates for the protein-ligand. At the end i got the following fatal error.FATAL: Atom .R<ASN 22>.A<N 1> does not have a type. How do i solve this issues.
>
> FATAL: Atom .R<ASN 22>.A<CA 2> does not have a type.
> FATAL: Atom .R<ASN 22>.A<C 3> does not have a type.
> FATAL: Atom .R<ASN 22>.A<O 4> does not have a type.
> FATAL: Atom .R<ASN 22>.A<CB 5> does not have a type.
> FATAL: Atom .R<ASN 22>.A<CG 6> does not have a type.
> FATAL: Atom .R<ASN 22>.A<OD1 7> does not have a type.
> FATAL: Atom .R<ASN 22>.A<ND2 8> does not have a type.
> FATAL: Atom .R<ASN 22>.A<H 9> does not have a type.
> FATAL: Atom .R<ASN 22>.A<HA 10> does not have a type.
> FATAL: Atom .R<ASN 22>.A<HB2 11> does not have a type.
> FATAL: Atom .R<ASN 22>.A<HB3 12> does not have a type.
> FATAL: Atom .R<ASN 22>.A<HD21 13> does not have a type.
> FATAL: Atom .R<ASN 22>.A<HD22 14> does not have a type.
> FATAL: Atom .R<GLY 23>.A<N 1> does not have a type.
> FATAL: Atom .R<GLY 23>.A<CA 2> does not have a type.
> FATAL: Atom .R<GLY 23>.A<C 3> does not have a type.
> FATAL: Atom .R<GLY 23>.A<O 4> does not have a type.
> FATAL: Atom .R<GLY 23>.A<H 5> does not have a type.
> FATAL: Atom .R<GLY 23>.A<HA2 6> does not have a type.
> FATAL: Atom .R<GLY 23>.A<HA3 7> does not have a type.
> FATAL: Atom .R<HIE 24>.A<N 1> does not have a type.
> FATAL: Atom .R<HIE 24>.A<CA 2> does not have a type.
> FATAL: Atom .R<HIE 24>.A<C 3> does not have a type.
> FATAL: Atom .R<HIE 24>.A<O 4> does not have a type.
> FATAL: Atom .R<HIE 24>.A<CB 5> does not have a type.
> FATAL: Atom .R<HIE 24>.A<CG 6> does not have a type.
> FATAL: Atom .R<HIE 24>.A<ND1 7> does not have a type.
> FATAL: Atom .R<HIE 24>.A<CD2 8> does not have a type.
> FATAL: Atom .R<HIE 24>.A<CE1 9> does not have a type.
> FATAL: Atom .R<HIE 24>.A<NE2 10> does not have a type.
> FATAL: Atom .R<HIE 24>.A<H 11> does not have a type.
> FATAL: Atom .R<HIE 24>.A<HA 12> does not have a type.
> FATAL: Atom .R<HIE 24>.A<HB2 13> does not have a type.
> FATAL: Atom .R<HIE 24>.A<HB3 14> does not have a type.
> FATAL: Atom .R<HIE 24>.A<HD2 15> does not have a type.
> FATAL: Atom .R<HIE 24>.A<HE1 16> does not have a type.
> FATAL: Atom .R<HIE 24>.A<HE2 17> does not have a type.
> FATAL: Atom .R<LYS 25>.A<N 1> does not have a type.
> FATAL: Atom .R<LYS 25>.A<CA 2> does not have a type.
> FATAL: Atom .R<LYS 25>.A<C 3> does not have a type.
> FATAL: Atom .R<LYS 25>.A<O 4> does not have a type.
> FATAL: Atom .R<LYS 25>.A<CB 5> does not have a type.
> FATAL: Atom .R<LYS 25>.A<CG 6> does not have a type.
> FATAL: Atom .R<LYS 25>.A<CD 7> does not have a type.
> FATAL: Atom .R<LYS 25>.A<CE 8> does not have a type.
> FATAL: Atom .R<LYS 25>.A<H 9> does not have a type.
> FATAL: Atom .R<LYS 25>.A<HA 10> does not have a type.
> FATAL: Atom .R<LYS 25>.A<HB2 11> does not have a type.
> FATAL: Atom .R<LYS 25>.A<HB3 12> does not have a type.
> FATAL: Atom .R<LYS 25>.A<HG2 13> does not have a type.
> FATAL: Atom .R<LYS 25>.A<HG3 14> does not have a type.
> FATAL: Atom .R<LYS 25>.A<HD2 15> does not have a type.
> FATAL: Atom .R<LYS 25>.A<HD3 16> does not have a type.
> FATAL: Atom .R<PHE 26>.A<N 1> does not have a type.
> FATAL: Atom .R<PHE 26>.A<CA 2> does not have a type.
> FATAL: Atom .R<PHE 26>.A<C 3> does not have a type.
> FATAL: Atom .R<PHE 26>.A<O 4> does not have a type.
> FATAL: Atom .R<PHE 26>.A<CB 5> does not have a type.
> FATAL: Atom .R<PHE 26>.A<CG 6> does not have a type.
> FATAL: Atom .R<PHE 26>.A<CD1 7> does not have a type.
> FATAL: Atom .R<PHE 26>.A<CD2 8> does not have a type.
> FATAL: Atom .R<PHE 26>.A<CE1 9> does not have a type.
> FATAL: Atom .R<PHE 26>.A<CE2 10> does not have a type.
> FATAL: Atom .R<PHE 26>.A<CZ 11> does not have a type.
> FATAL: Atom .R<PHE 26>.A<H 12> does not have a type.
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Received on Mon Sep 11 2017 - 08:30:03 PDT
