Dear all,
I am trying to compute rmsf for residues with 5 Angstroms from residue 172.
But the output that I obtained does not include residue 133 in the list.
Although I'm quite sure that 133 is within 5A from 172, I compute the
distance between these two residues. The residues 133 distance from 172 is
ranging from 4-7 Angtroms, for a total of 1000 frames. I then increased the
distance value for the rmsf value to <8, and still I cannot get 133 in the
output list.
I'm not sure why this is happening, pls enlighten me.
The commands that I used are:
atomicfluct out rmsfluct_activesite :172<:8.0 byres
distance dist_test :172 :133 out distance_172to133
Thanks!
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Received on Mon Sep 11 2017 - 01:30:03 PDT
