may be you can try the latest Miniconda release and install it to $AMBERHOME
(there is option to specify install path): https://conda.io/miniconda.html
Otherwise, try
./configure --with-python /path/to/your/python gnu
make install
Per mail digest, I don't know how since I don't use that.
Hai
On Tue, Sep 19, 2017 at 3:38 PM, Eric Smoll <ericsmoll.gmail.com> wrote:
> Hello Hai,
>
> I tried
> "bash AmberTools/src/configure_python --prefix ."
> and
> "bash AmberTools/src/configure_python --prefix $AMBERHOME"
>
> Both yield the same error:
>
> ImportError: No module named packages.urllib3.util
> Problem installing Miniconda... see error above.
> Configure failed due to the errors above!
>
> Also, I receive amber mailing list questions in the form of a digest. Is
> there a way to disable digest delivery and receive individual emails to the
> amber mailing list?
>
> Lastly, what is the proper way to responding to a message delivered in a
> digest? Do I just hit reply and edit the subject line to identify the email
> I am responding to?
>
> Best,
> Eric
>
>
>
> Message: 21
> Date: Tue, 19 Sep 2017 18:07:04 +0000
> From: Hai Nguyen <nhai.qn.gmail.com>
> Subject: Re: [AMBER] ambertools install issue
> To: AMBER Mailing List <amber.ambermd.org>
> Message-ID:
> <CAFNMPM94zp+aHXT+ACLSOkpY7+018qfoxs3yk3pM_nEaayvxeQ.mail.
> gmail.com>
> Content-Type: text/plain; charset="UTF-8"
>
> Can you try
>
> bash Ambertools/src/configure_python --prefix .
>
> H
>
> On Tue, Sep 19, 2017 at 1:50 PM Eric Smoll <ericsmoll.gmail.com> wrote:
>
> > Hello all,
> >
> > I am having trouble installing ambertools.
> >
> > $ tar xvjf AmberTools17.tar.bz2
> > $ cd amber16
> > $ ./configure gnu
> >
> > $ There are patches available. Do you want to apply them now? [y/N]
> > (Recommended Y)
> > $ y
> >
> > $ Should I download and install Miniconda for you? [y/n]
> > $ y
> >
> > ImportError: No module named packages.urllib3.util
> > Problem installing Miniconda... see error above.
> > Configure failed due to the errors above!
> >
> > How can I resolve this problem??
> >
> > -Eric
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Tue Sep 19 2017 - 14:30:02 PDT
