Amber Archive Jan 2020: by date

Wednesday, 1 January 2020
- Re: [AMBER] Tleap naming problem Rui Chen
- [AMBER] ligand clustering Neha Gandhi
- [AMBER] Regarding clustering using mmtsb toolkit Sruthi Sudhakar
- [AMBER] NMR distance restrained MD maya nair
Thursday, 2 January 2020
- Re: [AMBER] Regarding clustering using mmtsb toolkit Carlos Simmerling
- Re: [AMBER] Tleap naming problem David Case
- Re: [AMBER] Regarding clustering using mmtsb toolkit David Case
- Re: [AMBER] NMR distance restrained MD David Case
- Re: [AMBER] NMR distance restrained MD Christina Bergonzo
- [AMBER] query ankita mehta
- Re: [AMBER] query David Case
- [AMBER] MMPBSA error Rui Chen
- Re: [AMBER] MMPBSA error Ray Luo
- Re: [AMBER] MMPBSA error Rui Chen
- Re: [AMBER] MMPBSA error Ray Luo
- [AMBER] Semi-empirical QMMD on all molecules Abdullah Faheem
Friday, 3 January 2020
- [AMBER] Query ankita mehta
- Re: [AMBER] query ankita mehta
- Re: [AMBER] Semi-empirical QMMD on all molecules Goetz, Andreas
- Re: [AMBER] MMPBSA error Rui Chen
- [AMBER] Drug parameter generation Madhur Aggarwal
- Re: [AMBER] Drug parameter generation Carlos Simmerling
- Re: [AMBER] MMPBSA error Ray Luo
- Re: [AMBER] MMPBSA error Rui Chen
- [AMBER] Glycosylation issue: Atom xx was assigned a lower molecule # than previous atom. zizhang sheng
- Re: [AMBER] Glycosylation issue: Atom xx was assigned a lower molecule # than previous atom. Lachele Foley
- Re: [AMBER] Glycosylation issue: Atom xx was assigned a lower molecule # than previous atom. zz sheng
- Re: [AMBER] Glycosylation issue: Atom xx was assigned a lower molecule # than previous atom. Lachele Foley
- [AMBER] esp charge Rui Chen
Saturday, 4 January 2020
- [AMBER] Problems using groups to provide centre for solvent caps in tLeap David Wright
- [AMBER] parmed issue Ayesha Fatima
- [AMBER] hiii ankita mehta
- [AMBER] hiiiiii ankita mehta
- Re: [AMBER] parmed issue David Case
- Re: [AMBER] hiii David Case
- Re: [AMBER] MMPBSA error Ray Luo
- [AMBER] hiiiii ankita mehta
- [AMBER] pmemd.cuda:command not found Sruthi Sudhakar
- Re: [AMBER] pmemd.cuda:command not found Liao
Sunday, 5 January 2020
- [AMBER] MMPBSA standard deviation (Geng Dong) 东庚
- Re: [AMBER] hiiiii David Case
- [AMBER] hiiiii ankita mehta
- Re: [AMBER] hiiiii Carlos Simmerling
- Re: [AMBER] hiiiii ankita mehta
- Re: [AMBER] hiiiii Carlos Simmerling
- Re: [AMBER] hiiiii ankita mehta
- Re: [AMBER] MMPBSA standard deviation (Geng Dong) Ray Luo
- [AMBER] gaff with and without gaff atom types Erdem Yeler
- Re: [AMBER] hiiiii David Case
- Re: [AMBER] gaff with and without gaff atom types David Case
- Re: [AMBER] hiiiii ankita mehta
Monday, 6 January 2020
- Re: [AMBER] hiiiii Cory Ayres
Sunday, 5 January 2020
- Re: [AMBER] hiiiii ankita mehta
Monday, 6 January 2020
- [AMBER] Molecule is wrapped out of the cell. Petro
- [AMBER] Fwd: Problems using groups to provide centre for solvent caps in tLeap David Wright
- Re: [AMBER] NMR distance restrained MD maya nair
- [AMBER] Umbrella sampling sufficient overlap test Martin Rosellen
- Re: [AMBER] NMR distance restrained MD maya nair
- Re: [AMBER] empty cein file redox potential calculations Vaibhav Dixit
- [AMBER] printing charges in pdb Vaibhav Dixit
- Re: [AMBER] Fwd: Problems using groups to provide centre for solvent caps in tLeap David Case
- Re: [AMBER] printing charges in pdb David Case
- Re: [AMBER] Molecule is wrapped out of the cell. David Case
- Re: [AMBER] printing charges in pdb Vaibhav Dixit
- [AMBER] Any help on the error Debarati DasGupta
- [AMBER] Amber 18 installation error Billiot, Eugene
- [AMBER] [ Lone pair electron & Polymer ] 조준범
- [AMBER] [ Polymer with Extra Points ] 조준범
- [AMBER] DOPC lipid bilayer deformation in Implicit MD simulation using Lipid14 force field in Amber18 Bhat Zahoor
- Re: [AMBER] [ Polymer with Extra Points ] David Cerutti
Tuesday, 7 January 2020
- Re: [AMBER] gaff with and without gaff atom types Erdem Yeler
- Re: [AMBER] DOPC lipid bilayer deformation in Implicit MD simulation using Lipid14 force field in Amber18 Gould, Ian R
- Re: [AMBER] [ Polymer with Extra Points ] 조준범
- Re: [AMBER] Fwd: Problems using groups to provide centre for solvent caps in tLeap David Wright
- Re: [AMBER] Any help on the error David Case
- Re: [AMBER] Amber 18 installation error David Case
- [AMBER] Glycoprotein MD error in Amber18: an illegal memory access was encountered launching kernel kNLSkinTest zizhang sheng
- [AMBER] TI data collection of DU/Dlambda at constant volume Debarati DasGupta
- [AMBER] P2 correlation functions questions erik zuiderweg
- Re: [AMBER] Amber 18 installation error Billiot, Eugene
- Re: [AMBER] Molecule is wrapped out of the cell. Petro
- [AMBER] saxs Adrian Roitberg
- Re: [AMBER] P2 correlation functions questions David Case
- Re: [AMBER] AMBER 18 cuda installation David Case
- [AMBER] Question about addtobox Petro
Wednesday, 8 January 2020
- [AMBER] Adjacent cell molecules appear in the trajectory after autoimaging in cpptraj [ DOPC lipid bilayer simulation with lipid14 force field] Bhat Zahoor
- [AMBER] Generalized Born and entropy Martin Rosellen
- Re: [AMBER] error MYRIAN TORRES RICO
- Re: [AMBER] Question about addtobox David Case
- Re: [AMBER] Generalized Born and entropy David Case
- [AMBER] saxs_md Buteler,Maria del Pilar
- Re: [AMBER] saxs_md Christina Bergonzo
- [AMBER] NPT density equilibration Debarati DasGupta
- [AMBER] FW: NPT density equilibration Debarati DasGupta
- Re: [AMBER] Question about addtobox Petro
- [AMBER] [ Polymer ] Parameter Modification 조준범
- Re: [AMBER] [ Polymer ] Parameter Modification David Cerutti
- Re: [AMBER] error Gustaf Olsson
Thursday, 9 January 2020
- Re: [AMBER] [ Polymer with Extra Points ] David Cerutti
- [AMBER] Resolving overlapping atoms. Petro
- [AMBER] charting Ligand's movement in the binding pocket Prasanth G, Research Scholar
- [AMBER] [ inpcrd file ] 조준범
- Re: [AMBER] [ inpcrd file ] Gustaf Olsson
- [AMBER] Lipid bilayer imaging problem Bhat Zahoor
- Re: [AMBER] Lipid bilayer imaging problem Chetna Tyagi
- Re: [AMBER] Lipid bilayer imaging problem Bhat Zahoor
- [AMBER] MD error in Amber18: an illegal memory access was encountered launching kernel kNLSkinTest zizhang sheng
- Re: [AMBER] Resolving overlapping atoms. David Case
- Re: [AMBER] Question about addtobox David Cerutti
- Re: [AMBER] empty cein file redox potential calculations Cruzeiro,Vinicius Wilian D
- Re: [AMBER] MD error in Amber18: an illegal memory access was encountered launching kernel kNLSkinTest David Case
- Re: [AMBER] Question about addtobox David Case
- Re: [AMBER] Resolving overlapping atoms. Petro
- [AMBER] weights for the lambda values Debarati DasGupta
- Re: [AMBER] charting Ligand's movement in the binding pocket Markowska
- [AMBER] Cpptraj - Density Action Command Units An Ta
- [AMBER] [ prmtop ] SOLVENT_POINTERS 조준범
- Re: [AMBER] [ Polymer with Extra Points ] 조준범
- [AMBER] [ Error with MD ] Energetics of the system 조준범
Friday, 10 January 2020
- Re: [AMBER] weights for the lambda values Carlos Simmerling
- Re: [AMBER] [ prmtop ] SOLVENT_POINTERS Carlos Simmerling
- Re: [AMBER] [ Error with MD ] Energetics of the system David Case
- [AMBER] Is minimization and equilibration needed in umbrella sampling? Qing Lv
- [AMBER] Is NPT ensemble necessary for the protein-water system? Qing Lv
- Re: [AMBER] MD error in Amber18: an illegal memory access was encountered launching kernel kNLSkinTest zizhang sheng
- Re: [AMBER] MD error in Amber18: an illegal memory access was encountered launching kernel kNLSkinTest David Case
- Re: [AMBER] MD error in Amber18: an illegal memory access was encountered launching kernel kNLSkinTest zizhang sheng
- [AMBER] ff99SBnmr2 Force field implemented in AMBER18 Lod King
- Re: [AMBER] ff99SBnmr2 Force field implemented in AMBER18 Carlos Simmerling
Saturday, 11 January 2020
- [AMBER] Tracking ligand position throughout equilibration stages Debarati DasGupta
- [AMBER] Custom language module(s) for AMBER file types for common text editors? Makay Murray
Sunday, 12 January 2020
- [AMBER] installing amber on wsl Ayesha Fatima
- [AMBER] [ MD Failure ] 조준범
- [AMBER] compatible graphics card Antonio Bauzá
- Re: [AMBER] installing amber on wsl David Case
- Re: [AMBER] installing amber on wsl ALAMGIR KHAN
- Re: [AMBER] installing amber on wsl Ayesha Fatima
Monday, 13 January 2020
- Re: [AMBER] Tracking ligand position throughout equilibration stages Dr. Anselm Horn
- Re: [AMBER] Tracking ligand position throughout equilibration stages Carlos Simmerling
- Re: [AMBER] Generalized Born and entropy Rosellen, Martin
- Re: [AMBER] Generalized Born and entropy Carlos Simmerling
- [AMBER] Fwd: Periodic box problem when simulating Membrane system Tiejun Wei
- Re: [AMBER] [ MD Failure ] David Case
- [AMBER] Is error bar necessary for umbrella sampling? Qing Lv
- Re: [AMBER] Is error bar necessary for umbrella sampling? Carlos Simmerling
- Re: [AMBER] Periodic box problem when simulating Membrane system Gustaf Olsson
- Re: [AMBER] installing amber on wsl Ayesha Fatima
- Re: [AMBER] Periodic box problem when simulating Membrane system Bhat Zahoor
- [AMBER] CPPTRAJ-Hbonds Rui Chen
- [AMBER] parameters for Si3N4 Akshay Prabhakant
- Re: [AMBER] CPPTRAJ-Hbonds Daniel Roe
- [AMBER] Error with using dpeaks clustering in CPPTRAJ yinglong.miao.gmail.com
- Re: [AMBER] Error with using dpeaks clustering in CPPTRAJ Daniel Roe
- Re: [AMBER] Error with using dpeaks clustering in CPPTRAJ Yinglong Miao
- Re: [AMBER] Is error bar necessary for umbrella sampling? Qing Lv
Tuesday, 14 January 2020
- Re: [AMBER] Is error bar necessary for umbrella sampling? Carlos Simmerling
- Re: [AMBER] Error with using dpeaks clustering in CPPTRAJ Daniel Roe
- Re: [AMBER] Error with using dpeaks clustering in CPPTRAJ Yinglong Miao
- [AMBER] ligand split MYRIAN TORRES RICO
- Re: [AMBER] Error with using dpeaks clustering in CPPTRAJ yinglong.miao.gmail.com
- Re: [AMBER] ligand split David Case
- [AMBER] modeling a Schiff base with GAFF atom types Sally Pias
- Re: [AMBER] Generating parameters for iron-sulfur protein Baker, Joseph
Wednesday, 15 January 2020
- Re: [AMBER] ligand split MYRIAN TORRES RICO
- Re: [AMBER] ligand split Carlos Simmerling
- Re: [AMBER] ligand split MYRIAN TORRES RICO
- Re: [AMBER] ligand split Carlos Simmerling
- [AMBER] RESP fitting Sruthi Sudhakar
- Re: [AMBER] ligand split MYRIAN TORRES RICO
- Re: [AMBER] RESP fitting Elvis Martis
- [AMBER] How to use polarizable water model in Amber 18? Markowska
- Re: [AMBER] modeling a Schiff base with GAFF atom types David Case
- [AMBER] Harmless bug in Lipid11-17 residue libraries causing tleap to split fragments in saved PDB Matias Machado
- Re: [AMBER] How to use polarizable water model in Amber 18? Matias Machado
- Re: [AMBER] ligand split Carlos Simmerling
- Re: [AMBER] How to use polarizable water model in Amber 18? Carlos Simmerling
- [AMBER] Membrane simulation with PSM cpimenta
- Re: [AMBER] Custom language module(s) for AMBER file types for common text editors? Matias Machado
- [AMBER] ValueError: could not convert string to float: ********* Error occured on rank 0. Exiting. All files have been retained. Neha Gandhi
Thursday, 16 January 2020
- [AMBER] Reg. Centering of Molecule and Periodic Boundary Conditions DHEERAJ CHITARA
- [AMBER] Issues with Umbrella Sampling Simulations involving lipid bilayer Casalini Tommaso
- Re: [AMBER] Issues with Umbrella Sampling Simulations involving lipid bilayer Stephan Schott
- Re: [AMBER] Issues with Umbrella Sampling Simulations involving lipid bilayer Casalini Tommaso
- Re: [AMBER] ValueError: could not convert string to float: ********* Error occured on rank 0. Exiting. All files have been retained. David Case
- Re: [AMBER] Reg. Centering of Molecule and Periodic Boundary Conditions Daniel Roe
- [AMBER] vanilla Nose-Hoover thermostat availability Sally Pias
- Re: [AMBER] Issues with Umbrella Sampling Simulations involving lipid bilayer Stephan Schott
- [AMBER] pdb to mol2 conversion via antechamber Sruthi Sudhakar
Friday, 17 January 2020
- Re: [AMBER] pdb to mol2 conversion via antechamber Liao
- Re: [AMBER] How to use polarizable water model in Amber 18? Markowska
- Re: [AMBER] Issues with Umbrella Sampling Simulations involving lipid bilayer Casalini Tommaso
- [AMBER] Workshop on Free Energy calculations in Muenster March 11-13 2020 Vlad Cojocaru
- Re: [AMBER] Error with using dpeaks clustering in CPPTRAJ Daniel Roe
- Re: [AMBER] Error with using dpeaks clustering in CPPTRAJ Daniel Roe
- Re: [AMBER] Error with using dpeaks clustering in CPPTRAJ Daniel Roe
- Re: [AMBER] vanilla Nose-Hoover thermostat availability David Case
- Re: [AMBER] Error with using dpeaks clustering in CPPTRAJ Yinglong Miao
- Re: [AMBER] ligand split MYRIAN TORRES RICO
- Re: [AMBER] ligand split Carlos Simmerling
- Re: [AMBER] ligand split MYRIAN TORRES RICO
- Re: [AMBER] Error with using dpeaks clustering in CPPTRAJ Daniel Roe
- Re: [AMBER] Error with using dpeaks clustering in CPPTRAJ Yinglong Miao
- [AMBER] RDF: corrupted trajectory emanuele falbo
- Re: [AMBER] RDF: corrupted trajectory Daniel Roe
- [AMBER] Long syntax error on complex molecule Manisha Yadav
- Re: [AMBER] Long syntax error on complex molecule Thomas Cheatham
Saturday, 18 January 2020
- [AMBER] Problem in Amber update Kshatresh Dutta Dubey
- [AMBER] GPU-AMBER18 installation on RTX2080Ti ke.gohda.camm-kansai.org
- [AMBER] rror: an illegal memory access was encountered launching kernel kNLSkinTest Sruthi Sudhakar
- [AMBER] MMPBSA run failure Billiot, Eugene
- [AMBER] defining a progress variable to be the z-component of some atom or group of atoms? David Case
- Re: [AMBER] Problem in Amber update David Case
- Re: [AMBER] rror: an illegal memory access was encountered launching kernel kNLSkinTest David Case
- Re: [AMBER] How to use polarizable water model in Amber 18? Markowska
- Re: [AMBER] GPU-AMBER18 installation on RTX2080Ti Ross Walker
- Re: [AMBER] Generating parameters for iron-sulfur protein Pengfei Li
- Re: [AMBER] defining a progress variable to be the z-component of some atom or group of atoms? Goetz, Andreas
- Re: [AMBER] defining a progress variable to be the z-component of some atom or group of atoms? Gerardo Zerbetto De Palma
Sunday, 19 January 2020
- Re: [AMBER] Problem in Amber update Kshatresh Dutta Dubey
- [AMBER] Problem regarding umbrella sampling roomno sixtysix
- Re: [AMBER] defining a progress variable to be the z-component of some atom or group of atoms? Feng Pan
- Re: [AMBER] How to use polarizable water model in Amber 18? David Case
- [AMBER] Problem regarding umbrella sampling Rituparna Roy
Monday, 20 January 2020
- Re: [AMBER] RDF: corrupted trajectory emanuele falbo
- Re: [AMBER] GPU-AMBER18 installation on RTX2080Ti ke.gohda.camm-kansai.org
- Re: [AMBER] Problem regarding umbrella sampling David Case
- [AMBER] About ions coordinated to Zinc MENDOZA Cesar
- Re: [AMBER] defining a progress variable to be the z-component of some atom or group of atoms? Stephan Schott
- Re: [AMBER] Issues with Umbrella Sampling Simulations involving lipid bilayer Stephan Schott
- [AMBER] sqm calculation with external charges not working Anthony Bogetti
- [AMBER] convergence of Ref energies in cpHMD Kolattukudy P. Santo
- [AMBER] Is there any sense in even trying to model large conformational dynamics with molecular dynamics? Homeo Morphism
- Re: [AMBER] Is there any sense in even trying to model large conformational dynamics with molecular dynamics? Gerardo Zerbetto De Palma
- Re: [AMBER] Is there any sense in even trying to model large conformational dynamics with molecular dynamics? Carlos Simmerling
- Re: [AMBER] convergence of Ref energies in cpHMD Cruzeiro,Vinicius Wilian D
- [AMBER] NEB Simulations in Amber SHAUNAK BADANI
- Re: [AMBER] convergence of Ref energies in cpHMD Kolattukudy P. Santo
- Re: [AMBER] NEB Simulations in Amber Carlos Simmerling
- Re: [AMBER] convergence of Ref energies in cpHMD Cruzeiro,Vinicius Wilian D
- [AMBER] DUMPAVE digits Santiago Movilla
Tuesday, 21 January 2020
- Re: [AMBER] convergence of Ref energies in cpHMD Kolattukudy P. Santo
- [AMBER] Reg. working of Periodic Boundary Conditions DHEERAJ CHITARA
- Re: [AMBER] Issues with Umbrella Sampling Simulations involving lipid bilayer Charles Lin
- Re: [AMBER] Reg. working of Periodic Boundary Conditions David Case
- Re: [AMBER] RDF: corrupted trajectory Daniel Roe
- [AMBER] cpptraj_clucster Lod King
- Re: [AMBER] sqm calculation with external charges not working Goetz, Andreas
- [AMBER] generating g-quadruplex DNA structures from a sequence Vaibhav Dixit
- Re: [AMBER] convergence of Ref energies in cpHMD Cruzeiro,Vinicius Wilian D
Wednesday, 22 January 2020
- Re: [AMBER] RDF: corrupted trajectory emanuele falbo
- [AMBER] Wanting to get synchronized trajectory files Abdullah Bin Faheem
- Re: [AMBER] generating g-quadruplex DNA structures from a sequence David Case
- Re: [AMBER] Wanting to get synchronized trajectory files David Case
- Re: [AMBER] Wanting to get synchronized trajectory files Gustaf Olsson
- Re: [AMBER] convergence of Ref energies in cpHMD Kolattukudy P. Santo
- Re: [AMBER] Wanting to get synchronized trajectory files Abdullah Bin Faheem
- Re: [AMBER] Wanting to get synchronized trajectory files Carlos Simmerling
- Re: [AMBER] Wanting to get synchronized trajectory files Abdullah Bin Faheem
- Re: [AMBER] Wanting to get synchronized trajectory files Carlos Simmerling
- Re: [AMBER] Wanting to get synchronized trajectory files Abdullah Bin Faheem
- Re: [AMBER] vanilla Nose-Hoover thermostat availability Sally Pias
- Re: [AMBER] generating g-quadruplex DNA structures from a sequence Vaibhav Dixit
- [AMBER] Multiple GPU imstallation of AMBER 18 error Sruthi Sudhakar
- [AMBER] Normal mode analysis using trajectory files Divya Rai
Thursday, 23 January 2020
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Elvis Martis
- Re: [AMBER] Normal mode analysis using trajectory files Elvis Martis
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Sruthi Sudhakar
- Re: [AMBER] generating g-quadruplex DNA structures from a sequence Satyaseelan C
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Elvis Martis
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Sruthi Sudhakar
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Sruthi Sudhakar
- [AMBER] Parameter Files for Nanopore made of Si3N4(Silicon Nitride) Vishal Reddy
- [AMBER] Does anyone here use a99SB-disp force field and how did you obtain it? Homeo Morphism
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Sruthi Sudhakar
- Re: [AMBER] Does anyone here use a99SB-disp force field and how did you obtain it? Anthony Cruz-Balberdy
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Elvis Martis
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error David Case
- Re: [AMBER] Does anyone here use a99SB-disp force field and how did you obtain it? Casalini Tommaso
- Re: [AMBER] About ions coordinated to Zinc MENDOZA Cesar
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Sruthi Sudhakar
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Elvis Martis
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Sruthi Sudhakar
- [AMBER] steered MD question Baker, Joseph
- [AMBER] Shaw DE RNA ff in Amber format amirhossein taghavi
- Re: [AMBER] convergence of Ref energies in cpHMD Cruzeiro,Vinicius Wilian D
Friday, 24 January 2020
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Sruthi Sudhakar
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Elvis Martis
- [AMBER] Autoimage problem Agata Sowińska I34
- Re: [AMBER] About ions coordinated to Zinc MENDOZA Cesar
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Sruthi Sudhakar
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Sruthi Sudhakar
Saturday, 25 January 2020
- Re: [AMBER] Multiple GPU imstallation of AMBER 18 error Elvis Martis
Monday, 27 January 2020
- [AMBER] pmemd.cuda.MPI run error Sruthi Sudhakar
- Re: [AMBER] pmemd.cuda.MPI run error Gerardo Zerbetto De Palma
- Re: [AMBER] pmemd.cuda.MPI run error Elvis Martis
- Re: [AMBER] pmemd.cuda.MPI run error Sruthi Sudhakar
- Re: [AMBER] pmemd.cuda.MPI run error Sruthi Sudhakar
- Re: [AMBER] pmemd.cuda.MPI run error Gerardo Zerbetto De Palma
- Re: [AMBER] pmemd.cuda.MPI run error Sruthi Sudhakar
- [AMBER] Fwd: CalcError: /truba/sw/centos6.4/app/amber/amber14/bin/sander failed with prmtop gas.complex.prmtop! Rana Rehan Khalid
- [AMBER] About ferrocene MENDOZA Cesar
- [AMBER] Calculation of mask for TI input Airy Sanjeev
Tuesday, 28 January 2020
- Re: [AMBER] Calculation of mask for TI input Carlos Simmerling
- [AMBER] Several alpha-helices stitched together - how would you stress-test it with MD? Homeo Morphism
- Re: [AMBER] Several alpha-helices stitched together - how would you stress-test it with MD? Carlos Simmerling
- [AMBER] Amber on windows 10 Nicolas Feldman
- Re: [AMBER] Amber on windows 10 Elvis Martis
- Re: [AMBER] Amber on windows 10 Gustaf Olsson
- Re: [AMBER] Amber on windows 10 Nicolas Feldman
- Re: [AMBER] Amber on windows 10 Nicolas Feldman
- Re: [AMBER] Amber on windows 10 Gustaf Olsson
- Re: [AMBER] Amber on windows 10 Gustaf Olsson
- Re: [AMBER] Amber on windows 10 Nicolas Feldman
- Re: [AMBER] Amber on windows 10 Elvis Martis
- [AMBER] About utilities to convert Amber input files for MD into the Tinker, NAMD, Genesis, or Desmond input files Vlad
- Re: [AMBER] About utilities to convert Amber input files for MD into the Tinker, NAMD, Genesis, or Desmond input files Elvis Martis
- [AMBER] kindly guide me ALAMGIR KHAN
- Re: [AMBER] kindly guide me Gustaf Olsson
- Re: [AMBER] NMR distance restrained MD maya nair
Wednesday, 29 January 2020
- Re: [AMBER] kindly guide me ALAMGIR KHAN
- [AMBER] gnuplot MYRIAN TORRES RICO
- [AMBER] gnuplot MYRIAN TORRES RICO
- [AMBER] sulfonamide parameters for correct geometry Annachiara TINIVELLA
- Re: [AMBER] cpptraj_clucster Thayer, Kelly
- [AMBER] how does one reply to a thread in a mailing list Homeo Morphism
- [AMBER] Help building a model of a 2F-2S protein with MDPB.py Gustavo Seabra
- Re: [AMBER] how does one reply to a thread in a mailing list David Case
- Re: [AMBER] Help building a model of a 2F-2S protein with MDPB.py MENDOZA Cesar
- Re: [AMBER] Help building a model of a 2F-2S protein with MDPB.py MENDOZA Cesar
Thursday, 30 January 2020
- [AMBER] Error in installing parallel version of AMBER18 dilrajl.bii.a-star.edu.sg
- [AMBER] postdoc DNA/RNA simulations Jiri Sponer
- Re: [AMBER] postdoc DNA/RNA simulations Nicolas Feldman
- Re: [AMBER] Error in installing parallel version of AMBER18 Scott Brozell
- [AMBER] usefrcascoords calculations Lambach, Lauren
Friday, 31 January 2020
- [AMBER] Doubt regarding Collision frequency during NEB simulations SHAUNAK BADANI

Last message date: Fri Jan 31 2020 - 12:00:02 PST
Archived on: Fri Apr 26 2024 - 05:55:59 PDT

Amber Archive Jan 2020 by date