Did you apply all update patches before compiling serial amber??
On Friday, January 24, 2020, Sruthi Sudhakar <sruthisudhakarraji.gmail.com>
wrote:
> I have defined cuda home and continued with the installation. The
> ./configure -cuda -mpi gnu command gets completed. When we do make install
> the following error occurred:
> kRMSFit.h(106): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (PMEDouble *, PMEDouble)
>
> kRMSFit.h(192): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, PMEDouble)
>
> kRMSFit.h(163): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(164): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(165): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(168): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(169): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(170): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(173): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(174): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(175): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(181): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(182): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(183): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(185): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(186): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(187): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(106): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (PMEDouble *, PMEDouble)
>
> kRMSFit.h(192): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, PMEDouble)
>
> kRMSFit.h(163): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(164): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(165): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(168): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(169): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(170): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(173): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(174): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(175): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(181): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(182): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(183): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(185): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(186): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> kRMSFit.h(187): error: no instance of overloaded function "atomicAdd"
> matches the argument list
> argument types are: (double *, double)
>
> 34 errors detected in the compilation of
> "/tmp/tmpxft_00007234_00000000-20_kCalculateNEBForces.cpp4.ii".
> make[5]: *** [kCalculateNEBForces.o] Error 2
> make[5]: Leaving directory `/apps/amber18/src/pmemd/src/cuda'
> make[4]: *** [cuda_spfp_libs] Error 2
> make[4]: Leaving directory `/apps/amber18/src/pmemd/src'
> make[3]: *** [cuda_parallel_SPFP] Error 2
> make[3]: Leaving directory `/apps/amber18/src/pmemd/src'
> make[2]: *** [cuda_parallel] Error 2
> make[2]: Leaving directory `/apps/amber18/src/pmemd'
> make[1]: *** [cuda_parallel] Error 2
> make[1]: Leaving directory `/apps/amber18/src'
> make: *** [install] Error 2
>
> On Thu, Jan 23, 2020 at 9:08 PM Elvis Martis <elvis_bcp.elvismartis.in>
> wrote:
>
> > The original tar files for AMBER and AMBERTools contain all files you
> need
> > for installation.
> > For CUDA installation files, visit the NVIDIA website for the same.
> >
> > On Thursday, January 23, 2020, Sruthi Sudhakar <
> > sruthisudhakarraji.gmail.com>
> > wrote:
> >
> > > Thank you sir. I will do the same and check once again. I hope we don't
> > > need any other files for installation.
> > >
> > > On Thu, Jan 23, 2020 at 8:09 PM David Case <david.case.rutgers.edu>
> > wrote:
> > >
> > > > On Thu, Jan 23, 2020, Sruthi Sudhakar wrote:
> > > > >
> > > > >./configure -cuda -mpi -gnu
> > > > >When I continued with this step , I got the following error message:
> > > > >Error: CUDA_HOME is not set. This must point to your NVIDIA tools
> > > > >installation
> > > >
> > > > I agree with Elvis that this is odd, since CUDA_HOME would have had
> > > > to have been defined when you configured the serial version.
> > > >
> > > > If you didn't install CUDA yourself, you may need to search your
> > > > computer to find out where it is installed (or ask whoever carried
> > > > out the installation). The default location is in /usr/local/cuda.
> > > > See if that folder exists--it is probably a link to something like
> > > > /usr/local/cuda-10.0 (or some other version number). Set CUDA_HOME
> to
> > > > point to this folder.
> > > >
> > > > ....dac
> > > >
> > > >
> > > > _______________________________________________
> > > > AMBER mailing list
> > > > AMBER.ambermd.org
> > > > http://lists.ambermd.org/mailman/listinfo/amber
> > > >
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> >
> >
> > --
> > Best Regards
> > Elvis Martis
> > Mumbai.
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
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>
--
Best Regards
Elvis Martis
Mumbai.
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Received on Fri Jan 24 2020 - 04:00:01 PST
