Dear Prof Case,
Thanks for your reply.
>
> First: tell us exactly what you mean by "installing Amber 18": what
> exactly did you do?
>
> I followed the procedure mentioned in the manual e.g. untar the source
file, changed directory to amber18, and then I executed the configure
script. Of course, I can successfully install the Amber without an update,
but there are few patches for CUDA drivers >9.1 which I cannot apply.
Try this: before running configure, cd to your $AMBERHOME folder. Then
>
> ./update_amber --check-updates If that works, try:
> ./update_amber --update
>
> Let us know if you have any success. It's possible that the problem is
> specific to looking for upgrades.
>
I tried but it doesn't work. The error log appended in the email was from
/update_amber --update
Best Regards
Kshatresh
>
> I'm cc-ing this to Jason, in case he spots anything.
>
> ....dac
>
> >
> >Checking for available patches online. This may take a few seconds...
> >Traceback (most recent call last):
> > File "./update_amber", line 26, in <module>
> > app.mainloop()
> > File "/usr/local/amber18/updateutils/main.py", line 516, in mainloop
> > self.check_updates()
> > File "/usr/local/amber18/updateutils/main.py", line 183, in
> check_updates
> > if self.upgrade.look_for_upgrade():
> > File "/usr/local/amber18/updateutils/downloader.py", line 108, in
> new_fcn
> > return fcn(*args, **kwargs)
> > File "/usr/local/amber18/updateutils/upgrade.py", line 75, in
> >look_for_upgrade
> > urlopen(self.location + 'message.txt')
> > File "/usr/lib/python2.7/urllib2.py", line 154, in urlopen
> > return opener.open(url, data, timeout)
> > File "/usr/lib/python2.7/urllib2.py", line 429, in open
> > response = self._open(req, data)
> > File "/usr/lib/python2.7/urllib2.py", line 447, in _open
> > '_open', req)
> > File "/usr/lib/python2.7/urllib2.py", line 407, in _call_chain
> > result = func(*args)
> > File "/usr/lib/python2.7/urllib2.py", line 1228, in http_open
> > return self.do_open(httplib.HTTPConnection, req)
> > File "/usr/lib/python2.7/urllib2.py", line 1201, in do_open
> > r = h.getresponse(buffering=True)
> > File "/usr/lib/python2.7/httplib.py", line 1148, in getresponse
> > response.begin()
> > File "/usr/lib/python2.7/httplib.py", line 448, in begin
> > version, status, reason = self._read_status()
> > File "/usr/lib/python2.7/httplib.py", line 404, in _read_status
> > line = self.fp.readline(_MAXLINE + 1)
> > File "/usr/lib/python2.7/socket.py", line 480, in readline
> > data = self._sock.recv(self._rbufsize)
> >socket.timeout: timed out
> >
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
With best regards
************************************************************************************************
Dr. Kshatresh Dutta Dubey
Department of Chemistry
School of Natural Sciences
Shiv Nadar University
Gautam Budhha Nagar
Uttar Pradesh-201314
India
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Received on Sun Jan 19 2020 - 05:30:03 PST
