Re: [AMBER] Question about addtobox

From: David Case <>
Date: Thu, 9 Jan 2020 18:03:14 +0000

On Thu, Jan 09, 2020, Dave Cerutti wrote:

>The -P slot is described by the arguments list obtained by running the
>program with no arguments. It is there to define the upper limit of
>protein atoms, so if there is already solvent you are happy with then
>supply -P as the number of atoms to apply the -RP safety boundary against.
>All other atoms it finds will be assumed "solvent" and get the -RW safety

So what is the default value, if there is no -P flag?


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Received on Thu Jan 09 2020 - 10:30:02 PST
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