Hi,
On Thu, Jan 30, 2020 at 02:51:57PM +0000, dilrajl.bii.a-star.edu.sg wrote:
> ?? ?? ?? ?? ?? ?? ?? ?? I am trying to install AMBER18 in a Redhat enterprise
> server release 6.9.
>
> I successfully installed the serial and cuda version of the program
> using the standard commands as written below.
>
> SERIAL
> ./configure gnu
> make install
>
> CUDA
> ./configure -cuda gnu
> make install
>
> However, there is an issue to install the parallel version.I used the
> same configuration and installation command as shown below
> ./configure -mpi gnu??
> make install
>
> A part of the error message is attached here:
>
> --------------------^
> ../lib/AmberNetcdf.F90(161): error #6404: This name does not have a
> type, and must have an explicit type. [NF90_GLOBAL]
> if (NC_error( nf90_get_att(ncid, NF90_GLOBAL, 'Conventions', attribute),&
> -----------------------------------^
> ../lib/AmberNetcdf.F90(161): error #6404: This name does not have a
> type, and must have an explicit type. [NF90_GET_ATT]
> if (NC_error( nf90_get_att(ncid, NF90_GLOBAL, 'Conventions', attribute),&
> ----------------^
> ../lib/AmberNetcdf.F90(192): error #6404: This name does not have a
> type, and must have an explicit type. [NF90_GET_ATT]
> if (NC_error( nf90_get_att(ncid, NF90_GLOBAL, 'title', title),&
> ----------------^
> /tmp/ifortiNtttv.i90(1119): catastrophic error: Too many errors, exiting
> compilation aborted for ../lib/AmberNetcdf.F90 (code 1)
> make[2]: *** [AmberNetcdf.o] Error 1
> make[2]: Leaving directory `/home/md/dilrajl/amber18/AmberTools/src/sander'
> make[1]: *** [parallel] Error 2
There are many possible sources for this problem.
A likely one is a compiler mismatch between serial and parallel
builds. Compare the outputs of gfortran -v and mpif90 -v
If you need more help then send verbose and verbatim details
including compiler versions, build logs,
./update_amber --show-applied-patches
etc.
scott
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Received on Thu Jan 30 2020 - 12:00:04 PST
