Re: [AMBER] Regarding clustering using mmtsb toolkit

From: David Case <>
Date: Thu, 2 Jan 2020 13:35:57 +0000

On Thu, Jan 02, 2020, Sruthi Sudhakar wrote:
>I would like to know if there is an alternative software or methods to do
>the clustering in AMBER. Right now, I am doing the tutorial B3 about
>trpcage peptide. If not,could someone tell me about the installation of the
>tool kit? Apologies if the question seems irrelevant. Thanking you all in

Sigh....that tutorial was written in 2005. cpptraj now has extensive
clustering capability. Look at its "cluster" command in section 30.12.4
of the Reference Manual.


AMBER mailing list
Received on Thu Jan 02 2020 - 06:00:02 PST
Custom Search