Amber Archive Jul 2008 by author
436 messages
:
Starting
Wed Jul 02 2008 - 06:07:33 PDT,
Ending
Sun Aug 03 2008 - 06:07:39 PDT
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Abhishek Singh
AMBER: PMEMD and polarized force field ff 02
(Thu Jul 03 2008 - 07:53:36 PDT)
AMBER: PMEMD and polarized force field ff 02
(Thu Jul 03 2008 - 07:50:00 PDT)
Re: AMBER: Regarding force field ff02 and ion library
(Tue Jul 01 2008 - 12:02:28 PDT)
Adrian Roitberg
Re: AMBER: Hydroxyproline in AMBER
(Wed Jul 23 2008 - 09:14:06 PDT)
Re: AMBER: Trans proline
(Sun Jul 20 2008 - 05:27:45 PDT)
Re: AMBER: a link for Amber ff ported to Charmm
(Sat Jul 19 2008 - 15:10:58 PDT)
Re: AMBER: free energy
(Wed Jul 16 2008 - 07:10:41 PDT)
Re: AMBER: Constant pH with new parameters (amber10)
(Sat Jul 12 2008 - 16:47:41 PDT)
Adrien Delmont
Re: AMBER: big molecule numbers ( simulation with many formamide molecules )
(Sat Jul 26 2008 - 08:55:11 PDT)
AMBER: big molecule numbers ( simulation with many formamide molecules )
(Sat Jul 26 2008 - 02:04:08 PDT)
AMBER: simulation with many formamide molecules
(Fri Jul 25 2008 - 03:44:23 PDT)
AMBER: big molecule numbers
(Thu Jul 24 2008 - 15:27:22 PDT)
AMBER: concerning force fields ( to Karl Kirschner )
(Tue Jul 01 2008 - 01:04:45 PDT)
Alan
AMBER: ACPYPI announcement
(Thu Jul 31 2008 - 04:17:02 PDT)
AMBER: opls/aa in Amber status
(Thu Jul 31 2008 - 01:41:58 PDT)
Re: AMBER: interaction energies in Amber and VMD/NAMD
(Tue Jul 29 2008 - 03:10:48 PDT)
Re: AMBER: interaction energies in Amber and VMD/NAMD
(Tue Jul 29 2008 - 01:19:16 PDT)
Re: AMBER: NPRO net charge in amber10/dat/leap/lib/all_aminont03.lib is 0.900026, why?
(Mon Jul 28 2008 - 07:50:00 PDT)
Re: AMBER: NPRO net charge in amber10/dat/leap/lib/all_aminont03.lib is 0.900026, why?
(Mon Jul 28 2008 - 06:21:35 PDT)
Re: AMBER: NPRO net charge in amber10/dat/leap/lib/all_aminont03.lib is 0.900026, why?
(Mon Jul 28 2008 - 03:54:31 PDT)
Re: AMBER: interaction energies in Amber and VMD/NAMD
(Sat Jul 26 2008 - 23:26:32 PDT)
AMBER: NPRO net charge in amber10/dat/leap/lib/all_aminont03.lib is 0.900026, why?
(Sat Jul 26 2008 - 01:33:46 PDT)
Re: AMBER: Query about the charge of atoms in the parmtop file
(Fri Jul 25 2008 - 12:13:43 PDT)
Re: AMBER: amber ff and how it deals with out-plane chiral C
(Tue Jul 22 2008 - 07:41:27 PDT)
AMBER: amber ff and how it deals with out-plane chiral C
(Tue Jul 22 2008 - 00:59:05 PDT)
Re: AMBER: a link for Amber ff ported to Charmm
(Sat Jul 19 2008 - 22:50:22 PDT)
Re: AMBER: a link for Amber ff ported to Charmm
(Sat Jul 19 2008 - 14:50:25 PDT)
AMBER: a link for Amber ff ported to Charmm
(Sat Jul 19 2008 - 02:07:27 PDT)
Re: AMBER: antechamber and charmm
(Thu Jul 17 2008 - 09:05:40 PDT)
Re: AMBER: Ligand force field generation, and its consistency with the force field of the protein.
(Wed Jul 16 2008 - 05:46:15 PDT)
AMBER: antechamber and charmm
(Thu Jul 10 2008 - 02:43:58 PDT)
Alessandro Nascimento
Re: AMBER: interaction energies in Amber and VMD/NAMD (SOLVED)
(Wed Jul 30 2008 - 08:29:47 PDT)
Re: AMBER: interaction energies in Amber
(Mon Jul 28 2008 - 17:51:01 PDT)
Re: AMBER: interaction energies in Amber and VMD/NAMD
(Sun Jul 27 2008 - 17:38:56 PDT)
AMBER: interaction energies in Amber and VMD/NAMD
(Sat Jul 26 2008 - 09:09:38 PDT)
aneesh cna
AMBER: Energy analysis
(Fri Jul 25 2008 - 08:12:10 PDT)
Anna Reymer
Re: AMBER:
(Tue Jul 01 2008 - 05:46:24 PDT)
AMBER: AMBER10: ambpdb problems
(Tue Jul 01 2008 - 01:37:38 PDT)
AMBER:
(Tue Jul 01 2008 - 01:36:12 PDT)
Anselm Horn
AMBER: Indentifying cluster center structures in trajectory
(Wed Jul 23 2008 - 00:14:41 PDT)
Arturas Ziemys
Re: AMBER: amber9 / difference of igb=0 and igb=6
(Wed Jul 09 2008 - 14:03:32 PDT)
AMBER: amber9 / difference of igb=0 and igb=6
(Wed Jul 09 2008 - 12:45:32 PDT)
Re: AMBER: Inconsistent types (INTEGER(4)/REAL(8)) - Is it serious ?
(Wed Jul 02 2008 - 15:48:47 PDT)
AMBER: Inconsistent types (INTEGER(4)/REAL(8)) - Is it serious ?
(Wed Jul 02 2008 - 15:10:47 PDT)
Re: AMBER: "radius = 0.000"
(Tue Jul 01 2008 - 13:19:32 PDT)
Re: AMBER: "radius = 0.000"
(Tue Jul 01 2008 - 10:17:54 PDT)
AMBER: "radius = 0.000"
(Tue Jul 01 2008 - 09:08:45 PDT)
Balazs JOJART
Re: AMBER: how to generate psf file using the AMBER topology file
(Fri Jul 18 2008 - 04:09:21 PDT)
baohua zhang
AMBER: Volume of ucell too big
(Tue Jul 29 2008 - 20:30:43 PDT)
Barbault Florent
Re: AMBER: Trans proline
(Sat Jul 19 2008 - 23:27:37 PDT)
AMBER: problem with restraints
(Thu Jul 10 2008 - 11:59:15 PDT)
Beale, John
AMBER: Tutorial 6
(Mon Jul 14 2008 - 09:48:21 PDT)
ben rodriguez
RE: AMBER: RED III execution problem
(Mon Jul 07 2008 - 12:21:11 PDT)
AMBER: RED III execution problem
(Wed Jul 02 2008 - 18:24:19 PDT)
Bill Ross
Re: AMBER: Charge neutralization, GlcNac & GalNac improper torsional angles from old PREP
(Mon Jul 28 2008 - 17:26:35 PDT)
Re: AMBER: solvate dna in TIP3PBOX 10.0
(Sat Jul 26 2008 - 11:11:44 PDT)
Re: AMBER: Charge neutralization, GlcNac & GalNac improper torsional angles from old PREP
(Fri Jul 25 2008 - 13:40:27 PDT)
RE: AMBER: Regarding ff03 forcefield
(Fri Jul 25 2008 - 13:32:02 PDT)
Re: AMBER: solvate dna in TIP3PBOX 10.0
(Fri Jul 25 2008 - 13:28:46 PDT)
Re: Re: AMBER: improper dihedral in ff03 united atom forcefield
(Wed Jul 23 2008 - 11:19:31 PDT)
Re: AMBER: improper dihedral in ff03 united atom forcefield
(Tue Jul 22 2008 - 21:28:07 PDT)
Re: AMBER: amber ff and how it deals with out-plane chiral C
(Tue Jul 22 2008 - 14:44:36 PDT)
Re: AMBER: question about the improper torsion
(Tue Jul 15 2008 - 09:48:24 PDT)
Boutheina Kerkeni
Re: AMBER: free energy
(Wed Jul 16 2008 - 09:30:44 PDT)
AMBER: free energy
(Wed Jul 16 2008 - 08:54:39 PDT)
RE: AMBER: empty output
(Tue Jul 15 2008 - 10:31:50 PDT)
AMBER: empty output
(Sat Jul 12 2008 - 08:29:47 PDT)
AMBER: size of pdb
(Fri Jul 11 2008 - 08:13:57 PDT)
Re: AMBER: bond command
(Fri Jul 11 2008 - 05:00:48 PDT)
AMBER: bond command
(Thu Jul 10 2008 - 10:30:46 PDT)
Re: AMBER:
(Fri Jul 04 2008 - 05:27:59 PDT)
Re: AMBER:
(Fri Jul 04 2008 - 04:44:20 PDT)
Re: AMBER:
(Fri Jul 04 2008 - 04:02:10 PDT)
AMBER:
(Fri Jul 04 2008 - 03:34:55 PDT)
Brad Lambeth
AMBER: Where is ICO read from the ix array?
(Mon Jul 21 2008 - 12:49:44 PDT)
AMBER: Atom type with 10-12 and 6-12 interactions in Amber9
(Sat Jul 12 2008 - 17:20:09 PDT)
Carlos Simmerling
Re: AMBER: Q: ntc = 3 parallel runnable not compiled in Amber 9?
(Thu Jul 31 2008 - 05:07:21 PDT)
Re: AMBER: Amber 10 on the BlueGene
(Mon Jul 28 2008 - 11:37:59 PDT)
Re: AMBER: NPRO net charge in amber10/dat/leap/lib/all_aminont03.lib is 0.900026, why?
(Mon Jul 28 2008 - 06:52:08 PDT)
Re: AMBER: NPRO net charge in amber10/dat/leap/lib/all_aminont03.lib is 0.900026, why?
(Mon Jul 28 2008 - 05:54:51 PDT)
Re: AMBER: interaction energies in Amber and VMD/NAMD
(Sat Jul 26 2008 - 17:46:58 PDT)
Re: AMBER: interaction energies in Amber and VMD/NAMD
(Sat Jul 26 2008 - 10:20:11 PDT)
Re: AMBER: Query about the charge of atoms in the parmtop file
(Thu Jul 24 2008 - 06:09:45 PDT)
Re: AMBER: Query about the charge of atoms in the parmtop file
(Wed Jul 23 2008 - 10:16:09 PDT)
Re: AMBER: Hydroxyproline in AMBER
(Wed Jul 23 2008 - 09:03:01 PDT)
Re: AMBER: High force constant for MD ???
(Wed Jul 23 2008 - 04:02:13 PDT)
Re: AMBER: amber ff and how it deals with out-plane chiral C
(Tue Jul 22 2008 - 08:15:56 PDT)
Re: AMBER: amber ff and how it deals with out-plane chiral C
(Tue Jul 22 2008 - 04:57:04 PDT)
Re: AMBER: targeted MD
(Tue Jul 22 2008 - 04:48:15 PDT)
Re: AMBER: Trans proline
(Sun Jul 20 2008 - 04:50:39 PDT)
Re: AMBER: The list-directed or NAMELIST READ statement cannot be completed
(Thu Jul 17 2008 - 09:47:24 PDT)
Re: AMBER:Some questions about replica exchan ge
(Wed Jul 16 2008 - 08:04:25 PDT)
Re: Re: Re: AMBER: replicas trapped in a few low temperatures
(Thu Jul 10 2008 - 06:11:33 PDT)
Re: Re: Re: AMBER: replicas trapped in a few low temperatures
(Thu Jul 10 2008 - 05:12:51 PDT)
Re: Re: AMBER: replicas trapped in a few low temperatures
(Thu Jul 10 2008 - 05:00:58 PDT)
Re: Re: AMBER: replicas trapped in a few low temperatures
(Thu Jul 10 2008 - 04:23:39 PDT)
Re: AMBER: replicas trapped in a few low temperatures
(Thu Jul 10 2008 - 03:59:03 PDT)
Re: AMBER: REMD temperature profile
(Wed Jul 09 2008 - 08:28:59 PDT)
Re: AMBER: Force fields for REMD with GB solvent
(Wed Jul 09 2008 - 06:37:36 PDT)
Re: AMBER: Force fields for REMD with GB solvent
(Tue Jul 08 2008 - 15:03:31 PDT)
Re: AMBER:
(Fri Jul 04 2008 - 05:37:29 PDT)
Re: AMBER:
(Fri Jul 04 2008 - 04:50:44 PDT)
Re: AMBER:
(Fri Jul 04 2008 - 04:09:07 PDT)
Re: AMBER:
(Fri Jul 04 2008 - 03:42:27 PDT)
Re: AMBER: How to obtain the oriented trajectories?
(Thu Jul 03 2008 - 07:22:03 PDT)
Re: AMBER: "radius = 0.000"
(Tue Jul 01 2008 - 09:16:38 PDT)
Re: AMBER:
(Tue Jul 01 2008 - 05:15:15 PDT)
Chih-Ying Lin
AMBER: Force Field parameters : A new chemical compound
(Thu Jul 03 2008 - 10:52:17 PDT)
AMBER: is amber workshop available this summer??
(Wed Jul 02 2008 - 16:29:03 PDT)
Chris Moth
AMBER: analysing normal modes
(Wed Jul 09 2008 - 12:45:57 PDT)
Christopher Gaughan
AMBER: # of ligands and receptors in mmpbsa
(Fri Jul 25 2008 - 07:57:03 PDT)
Re: AMBER: free energy
(Wed Jul 16 2008 - 09:03:26 PDT)
Collins Nganou
AMBER: solvate dna in TIP3PBOX 10.0
(Sat Jul 26 2008 - 02:08:26 PDT)
AMBER: solvate dna in TIP3PBOX 10.0
(Thu Jul 24 2008 - 23:51:54 PDT)
AMBER: solvate dna in TIP3PBOX 10.0
(Thu Jul 24 2008 - 02:28:44 PDT)
David A. Case
Re: AMBER: how to get the potential energy of a protein from the system
(Thu Jul 31 2008 - 07:45:47 PDT)
Re: AMBER: Volume of ucell too big
(Tue Jul 29 2008 - 22:19:31 PDT)
Re: AMBER: interaction energies in Amber and VMD/NAMD
(Sat Jul 26 2008 - 17:36:46 PDT)
Re: AMBER: fortran runtime error in "make test.serial" with gfortran
(Fri Jul 25 2008 - 16:03:57 PDT)
Re: AMBER: Regarding ff03 forcefield
(Fri Jul 25 2008 - 13:46:26 PDT)
Re: AMBER: amber10: pmemd gfortran
(Fri Jul 25 2008 - 12:05:23 PDT)
Re: AMBER: big molecule numbers
(Thu Jul 24 2008 - 18:43:26 PDT)
Re: AMBER: Running patch "bugfix.at.all" with AmberTools 1.2
(Thu Jul 24 2008 - 16:37:32 PDT)
Re: AMBER: calculating the enthalpy of evaporation
(Thu Jul 24 2008 - 13:31:01 PDT)
Re: AMBER: adding missing residues
(Thu Jul 24 2008 - 08:37:36 PDT)
Re: AMBER: amber9 install problem
(Thu Jul 24 2008 - 08:08:21 PDT)
Re: AMBER: SHIFTS compile error
(Wed Jul 23 2008 - 10:22:32 PDT)
Re: AMBER: Where is ICO read from the ix array?
(Mon Jul 21 2008 - 16:54:18 PDT)
Re: AMBER: Amber tools 1.2 test failure (installation)
(Mon Jul 21 2008 - 16:36:16 PDT)
AMBER: Release of version 1.2 of AmberTools
(Mon Jul 21 2008 - 10:01:29 PDT)
Re: AMBER: a link for Amber ff ported to Charmm
(Sat Jul 19 2008 - 11:29:18 PDT)
Re: AMBER: antechamber and charmm
(Thu Jul 17 2008 - 09:16:02 PDT)
Re: AMBER: sleap test failures
(Tue Jul 15 2008 - 15:46:00 PDT)
Re: AMBER: ptraj: projection command missing in dispatch.c (AMBER 10)
(Tue Jul 15 2008 - 11:57:52 PDT)
Re: AMBER: files in Amber directory ( to Junmei Wang )
(Tue Jul 15 2008 - 11:55:41 PDT)
Re: AMBER: Nmode entropy calcs
(Sun Jul 13 2008 - 08:45:56 PDT)
Re: AMBER: size of pdb
(Sat Jul 12 2008 - 07:45:51 PDT)
Re: AMBER: question about the improper torsion
(Sat Jul 12 2008 - 07:43:46 PDT)
Re: AMBER: Constant pH with new parameters (amber10)
(Fri Jul 11 2008 - 11:41:09 PDT)
Re: AMBER: NMA
(Fri Jul 11 2008 - 11:19:06 PDT)
Re: AMBER: Question about loading frcmod.ionsjc_tip3p in xleap
(Thu Jul 10 2008 - 21:42:28 PDT)
Re: AMBER: difference between sander and NAB
(Thu Jul 10 2008 - 15:22:49 PDT)
Re: AMBER: trouble interpreting <P2> time correlation function data
(Sun Jul 06 2008 - 08:04:30 PDT)
Re: AMBER: PMEMD and polarized force field ff 02
(Thu Jul 03 2008 - 08:10:06 PDT)
Re: AMBER: NMR refinement
(Wed Jul 02 2008 - 17:21:54 PDT)
Re: AMBER: Inconsistent types (INTEGER(4)/REAL(8)) - Is it serious ?
(Wed Jul 02 2008 - 15:58:36 PDT)
Re: AMBER: Inconsistent types (INTEGER(4)/REAL(8)) - Is it serious ?
(Wed Jul 02 2008 - 15:25:18 PDT)
Re: AMBER: NONBONDED_PARM_INDEX
(Wed Jul 02 2008 - 08:04:26 PDT)
David Watson
Re: AMBER: ptraj selection
(Wed Jul 09 2008 - 23:01:01 PDT)
Re: AMBER: ptraj selection
(Wed Jul 09 2008 - 20:59:27 PDT)
Re: AMBER: ptraj selection
(Wed Jul 09 2008 - 19:11:16 PDT)
dipti lele
AMBER: Query
(Sat Jul 26 2008 - 23:40:54 PDT)
AMBER: Trans proline
(Wed Jul 23 2008 - 04:01:28 PDT)
AMBER: Trans proline
(Sat Jul 19 2008 - 22:53:00 PDT)
AMBER: querry
(Mon Jul 14 2008 - 01:05:15 PDT)
Dong Xu
Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9
(Tue Jul 29 2008 - 00:40:04 PDT)
AMBER: Energy minimization of protein-ligand complex
(Tue Jul 29 2008 - 00:18:57 PDT)
Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9
(Mon Jul 07 2008 - 23:37:54 PDT)
Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9
(Fri Jul 04 2008 - 12:21:31 PDT)
Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9
(Thu Jul 03 2008 - 23:33:03 PDT)
Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9
(Thu Jul 03 2008 - 23:28:44 PDT)
Dr. Suzie Byun
AMBER: parmbsc0
(Sat Jul 19 2008 - 08:40:05 PDT)
Enghui Yap
AMBER: bad nonbon in nmode (amber9)
(Mon Jul 14 2008 - 09:25:29 PDT)
fatima.chami.durham.ac.uk
RE: AMBER: ptraj problem with imaging
(Thu Jul 03 2008 - 09:11:19 PDT)
AMBER: ptraj problem with imaging
(Wed Jul 02 2008 - 09:52:32 PDT)
AMBER: RDF in ptraj
(Tue Jul 01 2008 - 06:34:35 PDT)
FyD
Re: AMBER: NPRO net charge in amber10/dat/leap/lib/all_aminont03.lib is 0.900026, why?
(Mon Jul 28 2008 - 05:28:50 PDT)
RE: AMBER: RED III execution problem
(Mon Jul 07 2008 - 13:54:30 PDT)
Re: AMBER: RESP calculation on Copper containing molecule
(Fri Jul 04 2008 - 03:25:42 PDT)
Re: AMBER: RED III execution problem
(Thu Jul 03 2008 - 02:25:24 PDT)
George Tzotzos
AMBER: AMBER10: Fortran Runtime Error
(Fri Jul 25 2008 - 08:19:03 PDT)
AMBER: AMBER 10: Fortran Runtime Error
(Fri Jul 25 2008 - 07:38:32 PDT)
AMBER: Installation of Amber 10 on Dual-Core Intel Mac
(Fri Jul 11 2008 - 13:33:55 PDT)
AMBER: Installation on Mac OSX G5 dual processor
(Fri Jul 11 2008 - 13:30:21 PDT)
Germain Vallverdu
AMBER: targeted MD
(Tue Jul 22 2008 - 03:08:04 PDT)
Grange Hermitage
AMBER: antechamber generated input for gaussian error
(Sat Jul 19 2008 - 17:53:49 PDT)
Re: AMBER: AmberTools1.1 (and 1.0) antechamber endless loop
(Mon Jul 14 2008 - 17:18:40 PDT)
Re: AMBER: AmberTools1.1 (and 1.0) antechamber endless loop
(Mon Jul 14 2008 - 00:41:40 PDT)
AMBER: POL3 with gaff and ff02EP
(Sun Jul 13 2008 - 18:15:43 PDT)
AMBER: AmberTools1.1 (and 1.0) antechamber endless loop
(Sun Jul 13 2008 - 18:06:33 PDT)
guardiani.fi.infn.it
AMBER: REMD temperature profile
(Wed Jul 09 2008 - 06:47:13 PDT)
Re: AMBER: Force fields for REMD with GB solvent
(Wed Jul 09 2008 - 02:37:43 PDT)
AMBER: Force fields for REMD with GB solvent
(Tue Jul 08 2008 - 09:24:27 PDT)
gurpreet singh
Re: AMBER: Res minimization
(Tue Jul 15 2008 - 21:25:54 PDT)
Re: AMBER: RMSD per residue
(Tue Jul 15 2008 - 21:13:59 PDT)
Gustavo Seabra
Re: AMBER: Which CO2 potential?
(Thu Jul 24 2008 - 06:08:53 PDT)
Re: AMBER: SCC-DFTB for Zinc atom
(Fri Jul 18 2008 - 16:21:45 PDT)
Re: AMBER: SCC-DFTB for Zinc atom
(Thu Jul 17 2008 - 08:48:33 PDT)
Re: AMBER: about RMSD per residue
(Wed Jul 16 2008 - 08:22:39 PDT)
Re: AMBER: Ligand force field generation, and its consistency with the force field of the protein.
(Wed Jul 16 2008 - 07:08:45 PDT)
Re: AMBER: about QMMM output
(Fri Jul 04 2008 - 08:33:06 PDT)
gustavo.seabra.gmail.com
Re: AMBER: Which CO2 potential?
(Wed Jul 23 2008 - 20:32:58 PDT)
Hannes Loeffler
Re: AMBER: Amber9 vs AmberTools 1.0: weird imaging problem with ptraj?
(Wed Jul 23 2008 - 04:11:57 PDT)
AMBER: Amber9 vs AmberTools 1.0: weird imaging problem with ptraj?
(Tue Jul 22 2008 - 07:08:36 PDT)
Hannes Wallnoefer
Re: AMBER: radius of calcium ion in MM_PBSA
(Mon Jul 28 2008 - 02:28:01 PDT)
AMBER: radius of calcium ion in MM_PBSA
(Mon Jul 28 2008 - 01:18:22 PDT)
AMBER: ptraj problem with centering in the box
(Wed Jul 02 2008 - 07:00:33 PDT)
Harry (Yicun) Ni
Re: AMBER: question about the improper torsion
(Mon Jul 14 2008 - 21:12:57 PDT)
AMBER: question about the improper torsion
(Fri Jul 11 2008 - 09:34:17 PDT)
AMBER: problem with rdparm
(Thu Jul 10 2008 - 15:05:41 PDT)
Heikki Salo
Re: AMBER: Prepgen
(Wed Jul 30 2008 - 01:58:28 PDT)
hklwatergod
Re: RE: AMBER: the install problem
(Mon Jul 28 2008 - 07:22:58 PDT)
AMBER: the install problem
(Sat Jul 26 2008 - 23:34:55 PDT)
AMBER: the pmemd problem
(Fri Jul 25 2008 - 04:51:32 PDT)
AMBER: amber9 install problem
(Wed Jul 23 2008 - 23:11:33 PDT)
Hu, Shaowen (JSC-SK)[USRA]
RE: AMBER: difference between sander and NAB
(Fri Jul 11 2008 - 06:02:51 PDT)
AMBER: difference between sander and NAB
(Thu Jul 10 2008 - 12:44:41 PDT)
huzehan19870731.126.com
AMBER:Some questions about replica exchan ge
(Wed Jul 16 2008 - 06:07:46 PDT)
Ilyas Yildirim
AMBER: Model of deoxyadenosine in Cornell 95 paper
(Sun Jul 13 2008 - 16:14:48 PDT)
Re: AMBER: ptraj selection
(Thu Jul 10 2008 - 17:58:08 PDT)
Re: AMBER: ptraj selection
(Wed Jul 09 2008 - 21:27:35 PDT)
Re: AMBER: ptraj selection
(Wed Jul 09 2008 - 20:13:22 PDT)
AMBER: ptraj selection
(Wed Jul 09 2008 - 18:07:39 PDT)
Re: AMBER: NMR refinement
(Wed Jul 02 2008 - 02:58:05 PDT)
IN SUK JOUNG
AMBER: SHIFTS compile error
(Tue Jul 22 2008 - 13:25:43 PDT)
Jaber Jahanbin Sardroodi
AMBER: fortran runtime error in "make test.serial" with gfortran
(Fri Jul 25 2008 - 15:23:25 PDT)
jacopo.sgrignani.unifi.it
AMBER: DMSOBOX
(Wed Jul 30 2008 - 00:05:00 PDT)
James W. Caldwell
RE: AMBER: amber10: pmemd gfortran
(Fri Jul 25 2008 - 15:06:01 PDT)
AMBER: amber10: pmemd gfortran
(Fri Jul 25 2008 - 11:23:06 PDT)
Jeff Schwinefus
Re: AMBER: Question about loading frcmod.ionsjc_tip3p in xleap
(Fri Jul 11 2008 - 09:41:21 PDT)
AMBER: Question about loading frcmod.ionsjc_tip3p in xleap
(Wed Jul 09 2008 - 14:27:46 PDT)
jessica stolee
AMBER: calculating the enthalpy of evaporation
(Thu Jul 24 2008 - 12:24:40 PDT)
Jianyin Shao
Re: AMBER: mask for oligosaccharide
(Wed Jul 30 2008 - 15:26:31 PDT)
Re: AMBER: Does clustering involve fitting?
(Wed Jul 30 2008 - 14:29:57 PDT)
Re: AMBER: ptraj selection
(Thu Jul 10 2008 - 08:56:55 PDT)
Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9
(Tue Jul 08 2008 - 21:45:46 PDT)
Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9
(Mon Jul 07 2008 - 15:41:03 PDT)
Jifeng Wang
Re: AMBER: SCC-DFTB for Zinc atom
(Fri Jul 18 2008 - 10:10:17 PDT)
AMBER: SCC-DFTB for Zinc atom
(Thu Jul 17 2008 - 08:33:15 PDT)
John Bennett
Re: AMBER: files in Amber directory ( to Junmei Wang )
(Fri Jul 18 2008 - 04:25:38 PDT)
AMBER: files in Amber directory ( to Junmei Wang )
(Tue Jul 15 2008 - 04:10:40 PDT)
Jones de Andrade
Re: AMBER: Which CO2 potential?
(Wed Jul 23 2008 - 20:45:00 PDT)
AMBER: Which CO2 potential?
(Wed Jul 23 2008 - 17:27:58 PDT)
Jose Borreguero
AMBER: parameters for Fe coordinated to four CYS ?
(Tue Jul 01 2008 - 17:12:37 PDT)
julliane Yoneda
AMBER: Problems in restrained minimization
(Wed Jul 23 2008 - 06:08:32 PDT)
AMBER: Problems with Frozen atoms
(Fri Jul 18 2008 - 13:06:54 PDT)
Junmei Wang
Re: AMBER: antechamber generated input for gaussian error
(Wed Jul 23 2008 - 08:29:21 PDT)
Re: AMBER: files in Amber directory ( to Junmei Wang )
(Thu Jul 17 2008 - 07:56:06 PDT)
Re: AMBER: antechamber and charmm
(Thu Jul 17 2008 - 07:33:23 PDT)
AMBER: compile amber10 on Mac
(Tue Jul 01 2008 - 14:45:31 PDT)
Karl Kirschner (kkirschn)
Re: AMBER: concerning force fields ( to Karl Kirschner )
(Tue Jul 01 2008 - 08:06:29 PDT)
Khaled Barakat
AMBER: Error when performing Alanine scanning
(Mon Jul 14 2008 - 18:41:26 PDT)
AMBER: Alanine scanning
(Sun Jul 13 2008 - 18:50:47 PDT)
khuram sb
AMBER: 1.5ns rst file to PDB file Conversion Error
(Tue Jul 22 2008 - 22:07:24 PDT)
AMBER: Restarting Problem in MD Simulation
(Fri Jul 18 2008 - 03:37:07 PDT)
Kliman, Michal
AMBER: protonated guanine, cytosine parameters
(Tue Jul 22 2008 - 15:22:19 PDT)
AMBER: Protonated Phosphate Problem
(Tue Jul 01 2008 - 10:20:14 PDT)
Lachele Foley (Lists)
Re: AMBER: Charge neutralization, GlcNac & GalNac improper torsional angles from old PREP
(Fri Jul 25 2008 - 07:47:54 PDT)
Re: AMBER: querry
(Tue Jul 22 2008 - 06:55:08 PDT)
Re: AMBER: [amber/glycam] dealing with fucose...
(Tue Jul 15 2008 - 07:45:19 PDT)
Re: AMBER: [amber/glycam] dealing with fucose...
(Fri Jul 11 2008 - 07:19:17 PDT)
Re: AMBER: [amber/glycam] dealing with fucose...
(Thu Jul 10 2008 - 10:24:41 PDT)
Re: AMBER: [amber/glycam] dealing with fucose...
(Tue Jul 08 2008 - 09:08:52 PDT)
linfu
RE: RE: AMBER: about QMMM output
(Sat Jul 05 2008 - 19:25:47 PDT)
Re: RE: AMBER: about QMMM output
(Fri Jul 04 2008 - 10:09:23 PDT)
AMBER: about QMMM output
(Thu Jul 03 2008 - 19:40:33 PDT)
luzhenw1.msu.edu
AMBER: about RMSD per residue
(Wed Jul 16 2008 - 06:48:05 PDT)
AMBER: RMSD per residue
(Tue Jul 15 2008 - 13:28:08 PDT)
M. L. Dodson
AMBER: Re: FreeBSD "port" for AmberTools-1.2
(Wed Jul 23 2008 - 07:17:56 PDT)
Re: AMBER: FreeBSD "port" for AmberTools-1.2
(Tue Jul 22 2008 - 12:30:27 PDT)
AMBER: FreeBSD "port" for AmberTools-1.2
(Tue Jul 22 2008 - 12:15:48 PDT)
AMBER: AmberTools-1.1 port for FreeBSD
(Thu Jul 17 2008 - 10:59:05 PDT)
Re: AMBER: bond command
(Thu Jul 10 2008 - 11:34:33 PDT)
Mark Williamson
Re: AMBER: XLeap Problems
(Wed Jul 09 2008 - 09:41:51 PDT)
Markus Kaukonen
Re: AMBER: Constant pH with new parameters (amber10)
(Sun Jul 20 2008 - 01:08:35 PDT)
Re: AMBER: Constant pH with new parameters (amber10)
(Sat Jul 12 2008 - 12:24:05 PDT)
AMBER: Constant pH with new parameters (amber10)
(Tue Jul 08 2008 - 00:39:57 PDT)
Max
AMBER: NONBONDED_PARM_INDEX
(Wed Jul 02 2008 - 01:54:35 PDT)
Michael Entz
AMBER: Hydroxyproline in AMBER
(Wed Jul 23 2008 - 08:40:05 PDT)
Mike Hanby
AMBER: Amber 10 on the BlueGene
(Mon Jul 28 2008 - 09:15:58 PDT)
RE: AMBER: Running patch "bugfix.at.all" with AmberTools 1.2
(Fri Jul 25 2008 - 09:16:37 PDT)
AMBER: Running patch "bugfix.at.all" with AmberTools 1.2
(Thu Jul 24 2008 - 14:47:34 PDT)
Myunggi Yi
Re: AMBER: Amber tools 1.2 test failure (installation)
(Thu Jul 24 2008 - 10:09:11 PDT)
AMBER: Amber tools 1.2 test failure (installation)
(Mon Jul 21 2008 - 15:17:05 PDT)
Navnit Kumar Mishra
Re: AMBER: radius of calcium ion in MM_PBSA
(Mon Jul 28 2008 - 02:55:33 PDT)
Neha Gandhi
Re: AMBER: radius of calcium ion in MM_PBSA
(Mon Jul 28 2008 - 01:46:50 PDT)
Re: AMBER: mm_pbsa incorrect complex prmtop file
(Thu Jul 10 2008 - 01:02:27 PDT)
Nick Holway
Re: AMBER: PMEND 9 compilation problems
(Wed Jul 30 2008 - 06:50:42 PDT)
AMBER: PMEND 9 compilation problems
(Tue Jul 29 2008 - 09:04:36 PDT)
oguz gurbulak
AMBER: prepare an initial structure in Amber
(Thu Jul 31 2008 - 09:58:24 PDT)
Panwang Zhou
Re: AMBER: DMSOBOX
(Wed Jul 30 2008 - 00:31:53 PDT)
AMBER: How to obtain the oriented trajectories?
(Thu Jul 03 2008 - 07:06:58 PDT)
Piotr Cieplak
Re: AMBER: Model of deoxyadenosine in Cornell 95 paper
(Tue Jul 15 2008 - 23:32:08 PDT)
Q733
AMBER: improper dihedrals in 03 united atom force field
(Tue Jul 22 2008 - 19:00:03 PDT)
Qicun Shi
AMBER: Q: ntc = 3 parallel runnable not compiled in Amber 9?
(Wed Jul 30 2008 - 20:51:17 PDT)
rebeca
AMBER: The list-directed or NAMELIST READ statement cannot be completed
(Thu Jul 17 2008 - 09:42:25 PDT)
rebeca.mmb.pcb.ub.es
AMBER: amb2gmx for big systems
(Thu Jul 31 2008 - 03:40:39 PDT)
Reena .....
AMBER: Regarding ff03 forcefield
(Fri Jul 25 2008 - 00:24:41 PDT)
Robert Duke
Re: AMBER: PMEND 9 compilation problems
(Wed Jul 30 2008 - 07:40:00 PDT)
Re: AMBER: PMEND 9 compilation problems
(Tue Jul 29 2008 - 10:41:54 PDT)
Re: AMBER: Amber 10 on the BlueGene
(Mon Jul 28 2008 - 10:17:18 PDT)
Re: AMBER: amber10: pmemd gfortran
(Fri Jul 25 2008 - 12:01:27 PDT)
Re: AMBER: amber 10: sander and pmemd performance
(Fri Jul 25 2008 - 09:06:41 PDT)
Re: AMBER: amber 10: sander and pmemd performance
(Fri Jul 25 2008 - 07:31:30 PDT)
Re: AMBER: the pmemd problem
(Fri Jul 25 2008 - 06:46:24 PDT)
Re: AMBER: timing info output from pmemd
(Fri Jul 11 2008 - 06:41:21 PDT)
Re: AMBER: configure_amber (10) for pg compilers
(Fri Jul 11 2008 - 05:27:02 PDT)
Re: AMBER: timing info output from pmemd
(Fri Jul 11 2008 - 05:14:29 PDT)
Re: AMBER: pmemd 10 output
(Thu Jul 10 2008 - 06:44:19 PDT)
Re: AMBER: pmemd 10 output
(Thu Jul 10 2008 - 06:12:25 PDT)
Re: AMBER: Inconsistent types (INTEGER(4)/REAL(8)) - Is it serious ?
(Wed Jul 02 2008 - 17:06:22 PDT)
Re: AMBER: Inconsistent types (INTEGER(4)/REAL(8)) - Is it serious ?
(Wed Jul 02 2008 - 17:00:07 PDT)
Re: AMBER: Inconsistent types (INTEGER(4)/REAL(8)) - Is it serious ?
(Wed Jul 02 2008 - 15:36:12 PDT)
Re: AMBER: Inconsistent types (INTEGER(4)/REAL(8)) - Is it serious ?
(Wed Jul 02 2008 - 15:29:52 PDT)
Re: AMBER: Inconsistent types (INTEGER(4)/REAL(8)) - Is it serious ?
(Wed Jul 02 2008 - 15:28:10 PDT)
Re: AMBER: "radius = 0.000"
(Tue Jul 01 2008 - 11:00:38 PDT)
Re: AMBER: "radius = 0.000"
(Tue Jul 01 2008 - 09:24:10 PDT)
Ross Walker
RE: AMBER: big molecule numbers ( simulation with many formamide molecules )
(Sun Jul 27 2008 - 02:19:41 PDT)
RE: AMBER: Query
(Sun Jul 27 2008 - 02:04:57 PDT)
RE: AMBER: the install problem
(Sun Jul 27 2008 - 02:00:59 PDT)
RE: AMBER: big molecule numbers ( simulation with many formamide molecules )
(Sat Jul 26 2008 - 06:58:34 PDT)
AMBER: RE: AMBER Question
(Sat Jul 26 2008 - 06:53:25 PDT)
RE: AMBER: AMBER10: Fortran Runtime Error
(Fri Jul 25 2008 - 14:22:16 PDT)
RE: AMBER: Regarding ff03 forcefield
(Fri Jul 25 2008 - 01:16:57 PDT)
RE: AMBER: solvate dna in TIP3PBOX 10.0
(Fri Jul 25 2008 - 01:14:26 PDT)
RE: AMBER: big molecule numbers
(Fri Jul 25 2008 - 01:10:05 PDT)
RE: AMBER: Query about the charge of atoms in the parmtop file
(Thu Jul 24 2008 - 05:49:03 PDT)
RE: AMBER: adding missing residues
(Thu Jul 24 2008 - 05:35:41 PDT)
RE: AMBER: solvate dna in TIP3PBOX 10.0
(Thu Jul 24 2008 - 05:29:51 PDT)
RE: AMBER: Indentifying cluster center structures in trajectory
(Wed Jul 23 2008 - 02:14:27 PDT)
RE: AMBER: 1.5ns rst file to PDB file Conversion Error
(Wed Jul 23 2008 - 02:08:46 PDT)
RE: AMBER: a link for Amber ff ported to Charmm
(Sat Jul 19 2008 - 15:28:24 PDT)
RE: AMBER: Restarting Problem in MD Simulation
(Fri Jul 18 2008 - 10:08:46 PDT)
RE: AMBER: how to generate psf file using the AMBER topology file
(Fri Jul 18 2008 - 09:57:14 PDT)
RE: AMBER: The list-directed or NAMELIST READ statement cannot be completed
(Thu Jul 17 2008 - 09:55:22 PDT)
RE: AMBER: about RMSD per residue
(Wed Jul 16 2008 - 09:40:42 PDT)
RE: AMBER:Some questions about replica exchan ge
(Wed Jul 16 2008 - 07:45:38 PDT)
RE: AMBER: about RMSD per residue
(Wed Jul 16 2008 - 07:52:38 PDT)
RE: AMBER: AmberTools1.1 (and 1.0) antechamber endless loop
(Tue Jul 15 2008 - 09:01:55 PDT)
RE: AMBER: Res minimization
(Tue Jul 15 2008 - 08:53:46 PDT)
RE: AMBER: AmberTools1.1 (and 1.0) antechamber endless loop
(Tue Jul 15 2008 - 08:50:20 PDT)
RE: AMBER: Tutorial 6
(Mon Jul 14 2008 - 11:48:05 PDT)
RE: AMBER: POL3 with gaff and ff02EP
(Sun Jul 13 2008 - 21:40:02 PDT)
RE: AMBER: AmberTools1.1 (and 1.0) antechamber endless loop
(Sun Jul 13 2008 - 21:35:42 PDT)
RE: AMBER: empty output
(Sat Jul 12 2008 - 09:54:01 PDT)
RE: AMBER: bond command
(Thu Jul 10 2008 - 12:15:53 PDT)
RE: AMBER: amber9 / difference of igb=0 and igb=6
(Wed Jul 09 2008 - 13:54:54 PDT)
RE: AMBER: XLeap Problems
(Wed Jul 09 2008 - 11:08:50 PDT)
RE: RE: AMBER: about QMMM output
(Fri Jul 04 2008 - 12:55:10 PDT)
RE: AMBER: about QMMM output
(Fri Jul 04 2008 - 09:30:09 PDT)
RE: AMBER: PMEMD and polarized force field ff 02
(Thu Jul 03 2008 - 08:02:17 PDT)
RE: AMBER: is amber workshop available this summer??
(Wed Jul 02 2008 - 21:19:31 PDT)
RE: AMBER: Inconsistent types (INTEGER(4)/REAL(8)) - Is it serious ?
(Wed Jul 02 2008 - 15:30:21 PDT)
RE: AMBER: ptraj problem with imaging
(Wed Jul 02 2008 - 13:06:42 PDT)
RE: AMBER: ptraj problem with centering in the box
(Wed Jul 02 2008 - 08:31:51 PDT)
sai kumar ramadugu
AMBER: imin = 5 and PBC
(Thu Jul 31 2008 - 07:51:21 PDT)
Sally Pias
Re: AMBER: trouble interpreting <P2> time correlation function data
(Sun Jul 06 2008 - 10:08:18 PDT)
AMBER: trouble interpreting <P2> time correlation function data
(Sat Jul 05 2008 - 23:59:57 PDT)
Sandeep Kaushik
Re: AMBER: Charge neutralization, GlcNac & GalNac improper torsional angles from old PREP
(Mon Jul 28 2008 - 05:30:16 PDT)
AMBER: Charge neutralization, GlcNac & GalNac improper torsional angles from old PREP
(Fri Jul 25 2008 - 03:04:11 PDT)
Re: AMBER: querry
(Tue Jul 22 2008 - 05:09:08 PDT)
Schwehm, Jeffrey M.
AMBER: XLeap Problems
(Wed Jul 09 2008 - 09:26:14 PDT)
Scott Brozell
RE: AMBER: amber10: pmemd gfortran
(Thu Jul 31 2008 - 20:16:45 PDT)
Re: AMBER: # of ligands and receptors in mmpbsa
(Thu Jul 31 2008 - 19:14:50 PDT)
Re: AMBER: Question about loading frcmod.ionsjc_tip3p in xleap
(Thu Jul 31 2008 - 15:40:43 PDT)
RE: AMBER: Running patch "bugfix.at.all" with AmberTools 1.2
(Thu Jul 31 2008 - 15:04:55 PDT)
Re: AMBER: compile amber10 on Mac
(Thu Jul 03 2008 - 18:38:19 PDT)
Sergio Wong
AMBER: Nmode entropy calcs
(Sat Jul 12 2008 - 18:09:51 PDT)
Seth Lilavivat
AMBER: bellymask for DNA backbone doesn't seem to work
(Thu Jul 03 2008 - 13:13:40 PDT)
SeungPyo Hong
Re: AMBER: Ligand force field generation, and its consistency with the force field of the protein.
(Wed Jul 16 2008 - 18:50:31 PDT)
AMBER: Ligand force field generation, and its consistency with the force field of the protein.
(Wed Jul 16 2008 - 05:15:48 PDT)
Siddharth Rastogi
AMBER: Distance diagnolization matrix plot
(Wed Jul 09 2008 - 00:04:08 PDT)
soumick
AMBER: adding missing residues
(Thu Jul 24 2008 - 04:09:16 PDT)
Steve Seibold
AMBER: NMA
(Fri Jul 11 2008 - 09:34:00 PDT)
Steve Spronk
AMBER: Does clustering involve fitting?
(Fri Jul 25 2008 - 13:02:09 PDT)
AMBER: Problem with box dimension in AmberTools ptraj
(Mon Jul 21 2008 - 23:35:47 PDT)
sudipta sinha
AMBER: Problem in .parmtop file
(Mon Jul 28 2008 - 08:30:09 PDT)
TaoPaul
AMBER: how to get the potential energy of a protein from the system
(Thu Jul 31 2008 - 01:29:08 PDT)
teresa.ierano.unina.it
Re: AMBER: NMR refinement
(Thu Jul 03 2008 - 02:37:02 PDT)
AMBER: NMR refinement
(Wed Jul 02 2008 - 01:38:57 PDT)
Thomas Cheatham
Re: AMBER: Problem with box dimension in AmberTools ptraj
(Tue Jul 22 2008 - 09:47:42 PDT)
Re: AMBER: Amber9 vs AmberTools 1.0: weird imaging problem with ptraj?
(Tue Jul 22 2008 - 09:45:12 PDT)
Thomas Cheatham III
Re: AMBER: test of parallel sander 10 fail
(Tue Jul 15 2008 - 10:41:12 PDT)
Re: AMBER: Question about loading frcmod.ionsjc_tip3p in xleap
(Thu Jul 10 2008 - 15:20:04 PDT)
Re: AMBER: problem with rdparm
(Thu Jul 10 2008 - 15:13:35 PDT)
Re: AMBER: bellymask for DNA backbone doesn't seem to work
(Thu Jul 03 2008 - 13:40:47 PDT)
Thomas Leonard
AMBER: Res minimization
(Tue Jul 15 2008 - 00:34:47 PDT)
Thomas Steinbrecher
Re: AMBER: free energy
(Wed Jul 16 2008 - 09:22:45 PDT)
Re: AMBER: For help: how to perform double decoupling thermodynamic integration calculation in AMBER10
(Mon Jul 07 2008 - 15:56:49 PDT)
Re: AMBER: For help: Thermodynamic Integration of solvation free energy using soft-core potential
(Wed Jul 02 2008 - 12:08:40 PDT)
Re: AMBER: Protonated Phosphate Problem
(Tue Jul 01 2008 - 10:41:55 PDT)
Re: AMBER: "radius = 0.000"
(Tue Jul 01 2008 - 10:36:17 PDT)
Re: AMBER: "radius = 0.000"
(Tue Jul 01 2008 - 09:39:30 PDT)
tinni sona
Re: AMBER: Query about the charge of atoms in the parmtop file
(Thu Jul 24 2008 - 00:19:26 PDT)
AMBER: Query about the charge of atoms in the parmtop file
(Wed Jul 23 2008 - 09:48:19 PDT)
Re: AMBER: how to generate psf file using the AMBER topology file
(Sat Jul 19 2008 - 22:38:10 PDT)
Re: AMBER: how to generate psf file using the AMBER topology file
(Fri Jul 18 2008 - 05:08:48 PDT)
AMBER: how to generate psf file using the AMBER topology file
(Fri Jul 18 2008 - 03:41:11 PDT)
Vahdati N.
RE: AMBER: analysing normal modes
(Thu Jul 10 2008 - 05:49:15 PDT)
AMBER: analysing normal modes
(Tue Jul 08 2008 - 11:03:39 PDT)
Vidana.Epa.csiro.au
AMBER: RESP calculation on Copper containing molecule
(Fri Jul 04 2008 - 00:16:24 PDT)
Vijay Singh
AMBER: paricular atom coordinates?
(Thu Jul 17 2008 - 09:13:30 PDT)
Vlad Cojocaru
Re: AMBER: amber 10: sander and pmemd performance
(Fri Jul 25 2008 - 08:14:08 PDT)
AMBER: amber 10: sander and pmemd performance
(Fri Jul 25 2008 - 02:57:45 PDT)
AMBER: EVB tests failure
(Thu Jul 24 2008 - 01:34:52 PDT)
AMBER: Re: amber 10 and mpich2 (got eof on console error message from mpich2)
(Thu Jul 17 2008 - 06:33:04 PDT)
AMBER: amber 10 and mpich2 (got eof on console error message from mpich2)
(Thu Jul 17 2008 - 06:30:24 PDT)
Re: AMBER: sleap test failures
(Wed Jul 16 2008 - 05:40:12 PDT)
Re: AMBER: sleap test failures
(Wed Jul 16 2008 - 01:07:48 PDT)
AMBER: test of parallel sander 10 fail
(Tue Jul 15 2008 - 10:05:51 PDT)
AMBER: sleap test failures
(Tue Jul 15 2008 - 07:14:23 PDT)
AMBER: ptraj: projection command missing in dispatch.c (AMBER 10)
(Tue Jul 15 2008 - 06:45:11 PDT)
Re: AMBER: timing info output from pmemd
(Fri Jul 11 2008 - 06:54:02 PDT)
Re: AMBER: timing info output from pmemd
(Fri Jul 11 2008 - 05:33:31 PDT)
AMBER: configure_amber (10) for pg compilers
(Fri Jul 11 2008 - 04:51:47 PDT)
AMBER: timing info output from pmemd
(Fri Jul 11 2008 - 01:49:28 PDT)
Re: AMBER: pmemd 10 output
(Thu Jul 10 2008 - 07:18:28 PDT)
Re: AMBER: pmemd 10 output
(Thu Jul 10 2008 - 06:29:17 PDT)
Re: AMBER: pmemd 10 output
(Thu Jul 10 2008 - 06:26:01 PDT)
Re: AMBER: pmemd 10 output
(Thu Jul 10 2008 - 03:19:08 PDT)
Wang,Ying
Re: AMBER: bond command
(Thu Jul 10 2008 - 10:56:01 PDT)
Waqas Nasir
Re: AMBER: High force constant for MD ???
(Thu Jul 24 2008 - 03:42:13 PDT)
AMBER: High force constant for MD ???
(Wed Jul 23 2008 - 02:49:46 PDT)
Re: AMBER: [amber/glycam] dealing with fucose...
(Sat Jul 12 2008 - 12:44:13 PDT)
Re: AMBER: [amber/glycam] dealing with fucose...
(Fri Jul 11 2008 - 02:47:36 PDT)
Re: AMBER: [amber/glycam] dealing with fucose...
(Thu Jul 10 2008 - 05:59:34 PDT)
AMBER: [amber/glycam] dealing with fucose...
(Tue Jul 08 2008 - 07:56:31 PDT)
Wei Huang
Re: AMBER: about RMSD per residue
(Wed Jul 16 2008 - 08:31:24 PDT)
RE: AMBER: about RMSD per residue
(Wed Jul 16 2008 - 08:08:36 PDT)
Re: AMBER: about RMSD per residue
(Wed Jul 16 2008 - 07:20:03 PDT)
Wenyong Tong
Re: AMBER: mask for oligosaccharide
(Wed Jul 30 2008 - 21:13:08 PDT)
AMBER: mask for oligosaccharide
(Wed Jul 30 2008 - 11:23:58 PDT)
AMBER: for mask in rms
(Tue Jul 29 2008 - 20:35:23 PDT)
xiaonan zhang
AMBER: mm_pbsa incorrect complex prmtop file
(Thu Jul 10 2008 - 00:44:58 PDT)
Ye Mei
Re: Re: Re: AMBER: replicas trapped in a few low temperatures
(Thu Jul 10 2008 - 05:35:41 PDT)
Re: Re: Re: AMBER: replicas trapped in a few low temperatures
(Thu Jul 10 2008 - 05:11:28 PDT)
Re: Re: Re: AMBER: replicas trapped in a few low temperatures
(Thu Jul 10 2008 - 04:49:08 PDT)
Re: Re: AMBER: replicas trapped in a few low temperatures
(Thu Jul 10 2008 - 04:16:59 PDT)
AMBER: replicas trapped in a few low temperatures
(Thu Jul 10 2008 - 02:13:25 PDT)
Yi-Ming Cheng
AMBER: Polarizable force field for divalent ions?
(Wed Jul 23 2008 - 03:59:08 PDT)
Yong Duan
RE: AMBER: Regarding ff03 forcefield
(Fri Jul 25 2008 - 09:24:19 PDT)
yongleli
AMBER: For help: how to perform double decoupling thermodynamic integration calculation in AMBER10
(Mon Jul 07 2008 - 15:04:53 PDT)
AMBER: For help: Thermodynamic Integration of solvation free energy using soft-core potential
(Wed Jul 02 2008 - 11:19:03 PDT)
欧阳德方
AMBER: the plot of the groove width versus time for RNA
(Thu Jul 17 2008 - 16:35:31 PDT)
秦姗姗
Re: Re: AMBER: improper dihedral in ff03 united atom forcefield
(Tue Jul 22 2008 - 22:14:11 PDT)
AMBER: improper dihedral in ff03 united atom forcefield
(Tue Jul 22 2008 - 18:49:28 PDT)
Last message date
:
Sun Aug 03 2008 - 06:07:39 PDT
Archived on
: Mon Dec 23 2024 - 05:53:38 PST
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