AMBER: about RMSD per residue

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From: <luzhenw1.msu.edu>
Date: Wed, 16 Jul 2008 09:48:05 -0400

Hi,

   Thanks for several response. However, I guess I
didn't make it clear what RMSD per residue means. There
are several papers using RMSD per residue. I am quite
sure it is not RMSF and I don't know how to use PTRAJ
to calculate. IF you have access to biophysical
chemistry, please check this paper:

                        Biophysical Chemistry 130
(2007) 65–75   Figure 1C

any suggestion about how to calculate it is
welcome. Thanks in advance.

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Received on Sun Jul 20 2008 - 06:07:09 PDT