Amber Archive Jul 2008 by messages with attachments

AMBER: ptraj problem with centering in the box Hannes Wallnoefer (Wed Jul 02 2008 - 07:00:33 PDT)
1. cube_with_gapes.png (481858 bytes)
AMBER: How to obtain the oriented trajectories? Panwang Zhou (Thu Jul 03 2008 - 07:06:58 PDT)
1. fox.gif (9519 bytes)
AMBER: trouble interpreting time correlation function data Sally Pias (Sat Jul 05 2008 - 23:59:57 PDT)
1. residue66_12520ps.jpg (33803 bytes)
2. residue66_15020ps.jpg (34893 bytes)
3. residue76_12520ps.jpg (33424 bytes)
4. residue76_15020ps.jpg (35188 bytes)
Re: AMBER: pmemd 10 output Vlad Cojocaru (Thu Jul 10 2008 - 03:19:08 PDT)
1. sample_output.out (222948 bytes)
Re: Re: AMBER: replicas trapped in a few low temperatures Ye Mei (Thu Jul 10 2008 - 04:16:59 PDT)
1. energy_temperature.pdf (6039 bytes)
Re: Re: Re: AMBER: replicas trapped in a few low temperatures Ye Mei (Thu Jul 10 2008 - 04:49:08 PDT)
1. temp_travel.10.pdf (51779 bytes)
2. temp_travel.14.pdf (44303 bytes)
Re: AMBER: timing info output from pmemd Vlad Cojocaru (Fri Jul 11 2008 - 06:54:02 PDT)
1. config_amber.h (3563 bytes)
Re: AMBER: ptraj selection Ilyas Yildirim (Thu Jul 10 2008 - 17:58:08 PDT)
1. form.pdb (7054 bytes)
2. prmtop.nowater (68736 bytes)
3. ptraj_heavy.in (133 bytes)
Re: AMBER: [amber/glycam] dealing with fucose... Waqas Nasir (Sat Jul 12 2008 - 12:44:13 PDT)
1. sample.pdb (111112 bytes)
AMBER: AmberTools1.1 (and 1.0) antechamber endless loop Grange Hermitage (Sun Jul 13 2008 - 18:06:33 PDT)
1. chp3.mol2 (24709 bytes)
Re: AMBER: [amber/glycam] dealing with fucose... Lachele Foley (Lists) (Tue Jul 15 2008 - 07:45:19 PDT)
1. sample_mod.pdb (111122 bytes)
AMBER: test of parallel sander 10 fail Vlad Cojocaru (Tue Jul 15 2008 - 10:05:51 PDT)
1. make_amber_parallel.log (186436 bytes)
Re: AMBER: Model of deoxyadenosine in Cornell 95 paper Piotr Cieplak (Tue Jul 15 2008 - 23:32:08 PDT)
1. ade.dat (3174 bytes)
AMBER: antechamber generated input for gaussian error Grange Hermitage (Sat Jul 19 2008 - 17:53:49 PDT)
1. gaussian.tar.gz (6752 bytes)
AMBER: EVB tests failure Vlad Cojocaru (Thu Jul 24 2008 - 01:34:52 PDT)
1. test_ambEVB_par2cpu.log (16716 bytes)
2. poh.out (8280 bytes)
AMBER: Charge neutralization, GlcNac & GalNac improper torsional angles from old PREP Sandeep Kaushik (Fri Jul 25 2008 - 03:04:11 PDT)
1. leap.log.txt (71309 bytes)
AMBER: AMBER10: Fortran Runtime Error George Tzotzos (Fri Jul 25 2008 - 08:19:03 PDT)
1. _nucgen.f (18521 bytes)
Re: AMBER: interaction energies in Amber and VMD/NAMD Alessandro Nascimento (Sun Jul 27 2008 - 17:38:56 PDT)
1. Untitled.png (204493 bytes)
Re: AMBER: interaction energies in Amber Alessandro Nascimento (Mon Jul 28 2008 - 17:51:01 PDT)
1. Untitled.png (204493 bytes)
Re: AMBER: DMSOBOX Panwang Zhou (Wed Jul 30 2008 - 00:31:53 PDT)
1. fox.gif (9519 bytes)
AMBER: prepare an initial structure in Amber oguz gurbulak (Thu Jul 31 2008 - 09:58:24 PDT)
1. prepare_an_initial_structure_in_Amber.ppt (159744 bytes)

Last message date: Sun Aug 03 2008 - 06:07:39 PDT
Archived on: Fri Nov 22 2024 - 05:53:40 PST

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